PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01542.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 688aa    MW: 74672 Da    PI: 6.6414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01542.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32281337259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g+H h+
  Pahal.F01542.1 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-EGHITEIVYKGSHSHP 337
                     8****************************************.***************7 PP
2WRKY104.55.8e-33493551159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Pahal.F01542.1 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGKHNHE 551
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.4275339IPR003657WRKY domain
SuperFamilySSF1182904.97E-26277339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-29278339IPR003657WRKY domain
SMARTSM007743.5E-36280338IPR003657WRKY domain
PfamPF031065.6E-25281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-37478553IPR003657WRKY domain
SuperFamilySSF1182901.02E-28485553IPR003657WRKY domain
PROSITE profilePS5081137.459488553IPR003657WRKY domain
SMARTSM007742.1E-37493552IPR003657WRKY domain
PfamPF031062.0E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAGTDNRRAL MEDWMLPSPS PRTLMSSFLN EEYSSGPFSS IFGDNSSNKP QDGIEKSKTF  60
GYPSVEETVQ DTKAPLQLES NLFIANQKSI SHGGLAERMA ARAGFGVLKI DTSRVSSPAP  120
IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPKNFKSMIS SVPKKAEDQS  180
HDDCAFSFQP ILRSKPPSFS TVDKGLSAFH QNQSLNDSQQ ELSLQASTTA TKDETEENLV  240
KPSTCDSMLD NDHPSPADEQ VESEENQNGE DSYVPVIAPA EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPN CPVKKKVERS QEGHITEIVY KGSHSHPLPP PNRRPSVPSS HVNDLQADGS  360
ENFGSKPGHN TETSRGMAPN DHFQDVHSGG LERNLSGSLT TTEIADTCIM ESQEAVDVSS  420
TVSSNEKDDR ATHGTIPSTY GGDEDETESK RRKMEVSATT NATTNAFDMA AMASRAVREP  480
RIVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT YAGCSVRKHV ERASNDLKSV  540
ITTYEGKHNH EVPAARNSSG QPNSSSGAAP QGSNLHRRPE PAQSSIPQLS AAAAYGSLCL  600
PPQLNAASGC FSFGMFPPGM AVPVPSLRTF MPASVPGHPP KMQGCAGLVL PRGEVKVNPE  660
EQSQLQVANR NALAAYQQFM GRLPQGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36281554878Probable WRKY transcription factor 4
2lex_A4e-36281554878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
TrEMBLA0A2S3I3L50.0A0A2S3I3L5_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-123WRKY DNA-binding protein 2