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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01337.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 27126.7 Da PI: 9.4563 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 137 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +t+s+v+ +l lp +f++++ + +++ t+tlede+ + e + ++ l++GW++F+ +++L +gD +vF+l++r++f +v Pahal.F01337.2 137 FVKPMTQSHVTGGFWLGLPTPFCRKYL-P-KRDETITLEDEEDDESETLY--LTRKM--GLSAGWRGFAIEHKLVDGDCLVFQLIERTKF--KVY 223 89************************5.3.35669*****9999999888..44443..39************************98888..777 PP EE-S CS B3 96 vfrk 99 ++r+ Pahal.F01337.2 224 MIRA 227 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-23 | 130 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-21 | 132 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.92E-23 | 135 | 226 | No hit | No description |
Pfam | PF02362 | 3.5E-15 | 137 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-19 | 137 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.871 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGTAQRKEMA DAVSYEEQRR RQVEANKRKL EELQLHHLSA AVREAAAKPS PAKKRKARVP 60 RDAAAEPLRR SGRVANLPEK PKYREEVQDF GRKVRRTYGS RRKDLANRVY ATDEERSHAI 120 TKAEELADEL GSSFPLFVKP MTQSHVTGGF WLGLPTPFCR KYLPKRDETI TLEDEEDDES 180 ETLYLTRKMG LSAGWRGFAI EHKLVDGDCL VFQLIERTKF KVYMIRASSY HEDEE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820060.1 | 1e-174 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 1e-124 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A2S3I114 | 1e-172 | A0A2S3I114_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00845.1.p | 1e-153 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-49 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01337.2 |
Publications ? help Back to Top | |||
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