PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01210.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 780aa    MW: 83975.8 Da    PI: 5.9327
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2099155157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Pahal.F01210.1  99 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 155
                     688999************************************************995 PP
2START191.73.5e-602965141206
                     HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlevi 85 
                     ela +a++el+++a +++p+W   +   +++++e+ + f+ + +      + ea+r+ +vv+m+   lve+l+d ++    ++  + +a+t+ev+
  Pahal.F01210.1 296 ELAVAAMDELLRMARLDAPLWGNGAagAQLDEEEYGRMFPGGLGprqygLRPEASRDGAVVIMTRDSLVEILMDANRfaaVFSSIVSRASTHEVL 390
                     57899**********************9***********6655599999999************************88888888888******** PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     s+g      galq+m++e+q++splvp R+++f+Ry++  ++g+w++vdvS+ds +++p    v +++++pSg+li++++ng+skvtwvehv+++
  Pahal.F01210.1 391 STGvagsynGALQVMSMEFQVPSPLVPtRESYFARYCKNNPDGTWAVVDVSLDSLRPNP----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVD 481
                     **********************************************************9....7******************************* PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     +r++h+l+r+lv+sgla+gak+wv tl+rqce+
  Pahal.F01210.1 482 DRSVHNLYRPLVNSGLAFGAKRWVGTLDRQCER 514
                     *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2378140IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2083156IPR009057Homeodomain-like
PROSITE profilePS5007117.02296156IPR001356Homeobox domain
SMARTSM003891.1E-1997160IPR001356Homeobox domain
PfamPF000464.2E-1899154IPR001356Homeobox domain
CDDcd000861.46E-1999157No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.608.9E-4141183IPR009057Homeodomain-like
CDDcd146860.00819152176No hitNo description
PROSITE profilePS5084838.129287517IPR002913START domain
SuperFamilySSF559615.5E-31288516No hitNo description
CDDcd088755.25E-117291513No hitNo description
SMARTSM002342.2E-54296514IPR002913START domain
PfamPF018525.0E-50297514IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-5388513IPR023393START-like domain
SuperFamilySSF559612.09E-24536769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MTPARRMPAM IGRNGVAYGS SSALSLSQAD LLDSHHLQQA FQQQLFDQIP AGVDSGDNII  60
HGRSDTLADE FESKSCSENP DGTSGDDGQE DPNQRPNKKK RYHRHTQHQI QEMEAFFKEC  120
PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKNQHERQ ENAQLRAEND KLRAENMRYK  180
EALSTASCPS CGGPAALGEM SFDEHHLRLE NARLRDEIDR ISGIAAKHVG KPMVSFPVLS  240
SPLAAAAARS PLDVVGAFGS AGLGPDHLFG VGAGAGELLR SVSTGQLDAD KPMIVELAVA  300
AMDELLRMAR LDAPLWGNGA AGAQLDEEEY GRMFPGGLGP RQYGLRPEAS RDGAVVIMTR  360
DSLVEILMDA NRFAAVFSSI VSRASTHEVL STGVAGSYNG ALQVMSMEFQ VPSPLVPTRE  420
SYFARYCKNN PDGTWAVVDV SLDSLRPNPV LKCRRRPSGC LIQEMPNGYS KVTWVEHVEV  480
DDRSVHNLYR PLVNSGLAFG AKRWVGTLDR QCERLASAMA SNIPNGDLGV ITSIEGRKSM  540
LKLAERMVAS FCGGVTASAA HQWTTLSGSG AEDVRVMTRK SVDDPGRPPG IVLNAATSFW  600
LPVPPKRVFD FLRDETSRSE WDILSNGGAV QEMAHIANGR DHGNCVSLLR VNSANSNQSN  660
MLILQESCTD ASGSYVVYAP VDVVAMNVVL NGGDPDYVAL LPSGFAILPD GPPGASPHGE  720
ISAGLEAGGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IACTVERIKA AVCAEGNPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663760.0BT066376.1 Zea mays full-length cDNA clone ZM_BFc0032A06 mRNA, complete cds.
GenBankKJ7275970.0KJ727597.1 Zea mays clone pUT5457 HB transcription factor (HB97) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821536.10.0homeobox-leucine zipper protein ROC1-like
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A2S3I0P40.0A0A2S3I0P4_9POAL; Uncharacterized protein
STRINGPavir.J09537.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]