PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01193.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 413aa    MW: 42297.8 Da    PI: 8.2593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01193.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-053053421254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pahal.F01193.1 305 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 342
                     677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-5303346No hitNo description
Gene3DG3DSA:4.10.280.102.8E-9303364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-12303363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0089304348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADHQEMIHP AAAAAAGGAS HGGDWWSTAV SCSPDQPPGF GAGLSPAGAA DGSNRSRSGN  60
AASSESPGSN SLATGGSSIT FQEPAGVADP GAVVVPQTAT GLAAAWNQPY YLDGSGFHGY  120
MSSSRGDQVH LGLRSPSSNN NSLMLQDPHD PNHQFLSNLG LELLSSPTSP SGGFRSSSLL  180
RSLTEPSAAA TKPSLGFQQY QQQTMNQAPS SIREALQFTN STPFWNPSSG FAAAAAAEGA  240
ASLGTAAGPP SGQSKSRPAS LAAKSALEGA GDSSSIITKK ANADPTPLKK ARTGTPSPLP  300
TFKVRKEKLG DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHQQVGSLS APYLKNRQQV  360
PHLKVSRDGG EAAAAKGDLT GRGLCLVPIS STFAVASETP VDFWSPFGAA FR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821266.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A2S3I0N20.0A0A2S3I0N2_9POAL; Uncharacterized protein
STRINGPavir.Fa02016.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-42bHLH family protein