PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.F01181.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 419aa MW: 45405.5 Da PI: 9.1532

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01181.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	129	165	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 ++k++rr+++NReAAr+sR+RKka+i++Le+ +L Pahal.F01181.1 129 RDKVQRRLAQNREAARKSRLRKKAYIQNLETSRMKLA 165 79***************************98444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-8	126	172	No hit	No description
SMART	SM00338	0.0042	127	180	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.002	129	171	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-8	129	167	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	131	172	No hit	No description
PROSITE pattern	PS00036	0	134	149	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.9E-28	213	287	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MELYPGYLED HFNIHKLSRL QPLAASGAHP GRYANATPAA AAAGAGAMGI YGRQRHQMAA 60 AGVWGDPFRP DGDALAAVAA PVTAVAAPVD VDVETEVKFG NHLAQDDVVP VEDAPPSSDS 120 FGHDDARPRD KVQRRLAQNR EAARKSRLRK KAYIQNLETS RMKLAQLEQE LTMARRQQGA 180 HAAGGLLAPP VDPRVAAFEM EYARWVEDQK KQARELRAAL QSGAPEFQLR FLVDAALAHY 240 GALFEAKSRA ARADAFFVLS GVWRAPAERF FLWIGGFRPS ELLKVLAPQL DPLAEPQASA 300 VRMLQNTARQ LEDALSQGMN KLQQTLVDAL MTVDAPDDAA SGAGGGYAAR QMASAVGKLD 360 DLVSFVDQAD HLRQQTLRNM NKILTVPQAA RGLLALADYS QRLRALSSLW AARPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MELYPGYLED HFNIHKLSRL QPLAASGAHP GRYANATPAA AAAGAGAMGI YGRQRHQMAA  60
AGVWGDPFRP DGDALAAVAA PVTAVAAPVD VDVETEVKFG NHLAQDDVVP VEDAPPSSDS  120
FGHDDARPRD KVQRRLAQNR EAARKSRLRK KAYIQNLETS RMKLAQLEQE LTMARRQQGA  180
HAAGGLLAPP VDPRVAAFEM EYARWVEDQK KQARELRAAL QSGAPEFQLR FLVDAALAHY  240
GALFEAKSRA ARADAFFVLS GVWRAPAERF FLWIGGFRPS ELLKVLAPQL DPLAEPQASA  300
VRMLQNTARQ LEDALSQGMN KLQQTLVDAL MTVDAPDDAA SGAGGGYAAR QMASAVGKLD  360
DLVSFVDQAD HLRQQTLRNM NKILTVPQAA RGLLALADYS QRLRALSSLW AARPREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820315.1	0.0	transcription factor TGA2.3-like isoform X1
Swissprot	A0A0P0WFC8	1e-124	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A2S3I0L8	0.0	A0A2S3I0L8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7D437	0.0	A0A2T7D437_9POAL; Uncharacterized protein
STRING	Si013962m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-104	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01181.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]