PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00945.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 372aa    MW: 38975.1 Da    PI: 9.4162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00945.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-12101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+++++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
   Pahal.F00945.1 101 AWTEDEHKKFLLGLNKLGKGDWRGISRNFVISRTPTQVASHAQKY 145
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.8E-42645IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.6972742IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.69293150IPR017930Myb domain
SuperFamilySSF466891.35E-1595151IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1797149IPR006447Myb domain, plants
SMARTSM007173.2E-1098148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10100147IPR009057Homeodomain-like
CDDcd001672.13E-8101146No hitNo description
PfamPF002491.0E-10101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTRDGVPPAA PPAPAAAGGA GGGDGPRRCS QCGHHGHNAR TCTARPVKLF GVRIGDKPMP  60
IRKSASMGNL AQLAAEGGGS GGREEGYGSD GERPHKKRGE AWTEDEHKKF LLGLNKLGKG  120
DWRGISRNFV ISRTPTQVAS HAQKYFNRQT NVHRRKRRSS LFDMVIDDSS DQLPLSRSSS  180
QEVEQDDPQS VAALPAPVVS PAAVAPPPVS VEAPASVPPP VQVPVPVATP QPMEHDSVAS  240
SSSAGQAGVV MPEAIPPYLY PMMIPPPYYH PAFVPVPCYG YVPFYYGPPG VAQVPHEVVK  300
PVAVHSTPPL NVKDLYNMSE LSLKGDDSNA NSGVPASPLP PKPIGRPERQ SAFHGKGPAG  360
GSSGGLIPAV K*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820943.10.0transcription factor MYBS3-like
TrEMBLA0A2S3I0820.0A0A2S3I082_9POAL; Uncharacterized protein
STRINGPavir.J25346.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-38MYB_related family protein