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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F00843.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 520aa MW: 55032.6 Da PI: 7.48 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F00843.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 56.6 | 6.8e-18 | 131 | 220 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt+ + L++a++++ e+l+rg+l++ +We+v+ ++ ++ +s +qCk+k++nl+kryk + ++ + ++++s++p+f+++e
Pahal.F00843.1 131 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqGKTTGGKSVEQCKNKIDNLKKRYKVECQRLASSGAGAVSHWPWFKKME 220
5*************************************7655444446899***************99999999989999*********8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 520 aa
Download sequence Send
to blast |
MASCDDDFGL LGDDAHQPAA PPPQPATAAQ QPAPPPPPVQ AFCFADAAVA AGAGAGAGSF 60 SQAQEESNHH AERGKAAHHA KRARERPDEF SSDGGEYCSY INSGGSGGGG KKGRSGGASS 120 GASDYRKDRE EWTDGAISSL LDAYTDRFEQ LNRGNLRGRD WEDVAGAVTD GQGKTTGGKS 180 VEQCKNKIDN LKKRYKVECQ RLASSGAGAV SHWPWFKKME QIVGNSASPA SSKPLAVAED 240 EKPRQQQQQH GSKRYPLSST GPPTVVGSSR TNPLSNPRWK RVLLKIGGTA LAGAAPQNVD 300 PKIIMLIARE VQVACHHGVE VAIVVGGRNI FCGDNWVAST GTDRASTYPI GMMASVMNSV 360 LLQASLEKIG VETRVQTALT IQEVAEPYVR RRAIRHLEKG RVVIFGGIGA GIGNPLFTTD 420 TAAALRASEI NADVVLKGIV GDDEYGCPPR GNSNTPFEHI SFRELAARGF SRMDMTAVTC 480 CEENNIPVVI FNMLEPGNIS RAICGDQIGT LVDQSGRIT*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3ek5_A | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek5_B | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek5_C | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek5_D | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek5_E | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek5_F | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek6_A | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek6_B | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek6_C | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek6_D | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek6_E | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
3ek6_F | 3e-61 | 271 | 512 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT067567 | 0.0 | BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds. |