 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.F00824.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 416aa MW: 44985.5 Da PI: 6.0437 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.F00824.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.2 | 2.9e-05 | 241 | 260 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Pahal.F00824.1 241 FSCPVCYKTFNRYNNMQMHM 260
89*****************9 PP
|
| 2 | zf-C2H2 | 12.5 | 0.00043 | 327 | 347 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +Cgk F k + ++H +++
Pahal.F00824.1 327 CRKCGKAFAVKGDWRTHEKNC 347
*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MEDPYTSFFK NPYYYYTTSF PSAPAPHLPP PLPPYTSLYP AVAAAAPQYP ACFFQPQPTL 60
PPLHDSPPSP PLREALPLLS QSPTRGCASR PRHVAADYDS DDDGDDFLRE VVGSSATPSG 120
RAPLFADLNC MPSCCDDGDP MDVEAGASTD DAAVALRIGL PAAPANGCDG TEADLLSGLT 180
GRACGGMEPE EDEEECKVDT GAGDGDEAVP LGFASTPIGR LNKGQYWIPT PAQILIGPTQ 240
FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC APGCRNNIDH 300
PRARPLKDFR TLQTHYKRKH GLKPFLCRKC GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK 360
HKRSLKDHAR AFGHGHGAFG CNVDGADGLE DEDEGAVSEI EQDCAAGATC RSSAR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
