PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00786.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1099aa    MW: 121871 Da    PI: 6.7132
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00786.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-21132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +d   
  Pahal.F00786.1 132 FCKTLTASDTSTHGGFSVPRRAAERIfphldfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRD--A 222
                     99*****************************954.4444.49************************************************54..5 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  Pahal.F00786.1 223 RQQLLLGIRRA 233
                     66679999987 PP
2Auxin_resp119.52.7e-39258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+++
  Pahal.F00786.1 258 AAHAAANNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNIQ 341
                     79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-40122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-38125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-17131221No hitNo description
PROSITE profilePS5086311.462132234IPR003340B3 DNA binding domain
PfamPF023621.1E-19132233IPR003340B3 DNA binding domain
SMARTSM010192.3E-19132234IPR003340B3 DNA binding domain
PfamPF065072.8E-34258341IPR010525Auxin response factor
PfamPF023091.2E-99781065IPR033389AUX/IAA domain
PROSITE profilePS5174527.0029801064IPR000270PB1 domain
SuperFamilySSF542772.55E-89831059No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
MAAPGTSSGG AGGEGGGGGT KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMR  60
KDADAKIPSY PNLPSKLICI LSSVTMHADP DTDEVYARMT LQPVSNVTQC DKETLLASEL  120
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPH LDFSMQPPAQ ELQARDLHDS  180
IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DARQQLLLGI RRANRQPVNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTV FYNPRASPSE FVIPFAKYQK AVYSNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDMDPV RWKNSQWRNI QVAWDEAAPS ERRTRVSLWE  360
IEPVIAPFFI YPSPLFTAKR PRQPGITDDE TSDMENHFKR TMPWFGEEIF KKDLNTQNNI  420
VPGLSLVQWM QQNPSLTSTV GQPELLNSLA GKPVQTLAAA DLSRQISFQP QFLQQNNNQF  480
NTSLLPPQNQ QTEQLAKVIA TPNQSGSVIV SQKVVQDCNP EQKQHATTQP VQGNQPMKSD  540
AQPQFVVQNQ LLQPQGILQA QPQQPQVIVQ AQIQQQQPLV QNHTILQSGI QQIHLLQQQQ  600
PHLQQQPQQV QQSVQEHQQI KIQPVQVPND MNLIAQLSDH QMKIQLLKAL QPQQPLIMEQ  660
QKMILDLQHQ TVNSNSQSTA QQCAQVATQV GGMHNSNNIQ YPTQQKTQPH QPIQDFPGNA  720
VSVANPENST SMGARSLHVP GGLQSLKTED VPSSSTSPPT NNNPVLLQSV PCSSKNQSLL  780
AVAKTPQSSA IVGPTLEQGM KLYESTQQMV MIPKMAEQKP GTRQDYVNNT QMDYLDTSSS  840
ATSVCLSQAD GSLHQNFPPS SFNQHQLLRQ TVPDSEFEVT DPGNNFLFGA NIDGHLESLN  900
ADALLANNFE TEKYMDQIPG RGISNYISSK DSQQELSSSM ISHSFGVAEI AFNSIDSSIN  960
DTPFLNRNSR PPPPAHQRIR TYTKVHKRGA VGRSIDINRY SGYDELKHDV ARMFGIEGQL  1020
SDQNRGGWKL VYEDHEKDVL LVGDDPWEDF VNCVRCIRIL SPQEEMQMRL ASDFGDSFLP  1080
KQACSSSDGV HPWRVSGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602236251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820393.10.0auxin response factor 21-like isoform X1
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A2S3I3T90.0A0A2S3I3T9_9POAL; Auxin response factor
STRINGPavir.Fb01896.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]