PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00723.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 343aa    MW: 36782 Da    PI: 7.2683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00723.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52281551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+evl++
  Pahal.F00723.1  28 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDLNRCEPWELPDAARMGEREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDREVLNA 121
                     79************************9777.34***************8888899**************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g+l g+kktLvfykgrap+gekt+Wv+heyrl
  Pahal.F00723.1 122 aTGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL 155
                     78899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-6318178IPR003441NAC domain
PROSITE profilePS5100558.0928178IPR003441NAC domain
PfamPF023653.5E-2729155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MHHQAMGDAL WDLLGEEMAA AAAGEHGLPP GFRFHPTDEE LVTFYLAAKV FNGACCGVDI  60
AEVDLNRCEP WELPDAARMG EREWYFFSLR DRKYPTGMRT NRATGAGYWK ATGKDREVLN  120
AATGALLGMK KTLVFYKGRA PRGEKTKWVL HEYRLDGDFA AARRSCKEEW VICRILHKAG  180
DQYSKLMMVK NPYCYLPMGV VDPSSLCFQQ DPAAPPLPNP SGCSSAGLPF HHGHHPGMQP  240
PLLPTNQLKL SSGCGFPASA QEPPPNGCGG SSNAAAMGMP SYPSPFTSIV AGKPAAPPAQ  300
AAAVVNAGAQ EPPAPPPTWM EAYVQHGGFL YEMGPAAAPR GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48141811171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612700.0BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822038.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8513e-90NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2S3I4R70.0A0A2S3I4R7_9POAL; Uncharacterized protein
STRINGPavir.Fb01938.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.17e-88NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]