![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F00674.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 402aa MW: 42202.8 Da PI: 5.3165 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F00674.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pha&pid=Pahal.F00674.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 28.1 | 3.5e-09 | 210 | 257 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq
Pahal.F00674.1 210 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 257
8*************************9....677*****************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MEGRAGGGDY IASLLSSAPR LDFGVLGSVP AMLDAAAAGG DGGEDCLDRF CGDPGFAERA 60 ARLSSFSGQR FAGAGAAAGL FGLPPPAPAA SNGEFAGSRE ASSVSDPASA MKDANAKKRK 120 APAAAKGKGK ESSAQAGDQK DPDAKRCKTE GAEGKKEESP VKPKSEQAGS DSSVEDGGQK 180 PAGKGNNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ DLVPGCNKVI 240 GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSDLPT LLQKDMFQAC GPSASSVFSL 300 ESSSSGFPFS DQGDVFQSFV PNGLENQCGL NPLDLALSQA TNAPYAFQDG TPSTNLQQRN 360 FWEDDLQSVF HIDNGQSQEN GGVSAQSFHG QLQAGHMKIE F*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT036118 | 0.0 | BT036118.1 Zea mays full-length cDNA clone ZM_BFb0096I10 mRNA, complete cds. |