PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00617.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 447aa    MW: 45844 Da    PI: 8.1803
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00617.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.7e-41127203278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C vegC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
  Pahal.F00617.1 127 CAVEGCTADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDDTKRSCRKRLDGHNRRRRKPQP 203
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-35118188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-39125206IPR004333Transcription factor, SBP-box
PfamPF031104.5E-31127200IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDWDLKAPGA WDLAELEHDH AGGAAAAAAG AAGTSGGHGN AAASAYRPPG ALECSVDLKL  60
GGLGECELGA APARRQPAAA AAGKAPAPAA SGAAAAAGPS SPGPGAPAKR PRPAGGGGQQ  120
QQQCPSCAVE GCTADLSKCR DYHRRHKVCE AHSKTPVVVV AGREMRFCQQ CSRFHLLAEF  180
DDTKRSCRKR LDGHNRRRRK PQPDTMASAS FIASQQGTRF SPFAAPRLDA NWPGVIKTEE  240
SPYYTHQIPL GTSNRHHFVG SSSAYAKEGR RFPFLQEGEI NFATGVVLEA PASARQPVLK  300
TAAPPESSSG STGGKMFSDG LTRVLDSDCA LSLLSAPANS SGIDVSRMVR PTEHVPMAQP  360
VVSGLQFGSP SWFSRPQASA GGAAAATAGF PPCPVAEGGQ QLNTVLSSND NEMNYSGMFH  420
VGGSGGGGGG EGSSDGTSSS LPFSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261272001184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112KRPRP
2183200KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819972.10.0teosinte glume architecture 1-like
SwissprotQ49I571e-179TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A2S3I4720.0A0A2S3I472_9POAL; Uncharacterized protein
STRINGSi013747m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-39SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]