PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00588.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 24239.7 Da PI: 10.7729 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.1 | 1.5e-31 | 20 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tksgyWkatgkdk 90 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p +++a+e e yfF+ r + g rk+ a t+sg+Wk gk+k Pahal.F00588.2 20 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSLDPWDIP-AADASEGEKYFFAVRPASVGGGCRKSGArspaTASGRWKPAGKEK 112 79****************************.8899999***********.556677899********99987776543334499*********** PP NAM 91 evlsk.....kgelvglkktLvfy.....kgrapkge......ktdWvmheyrl 128 +v+ ++ lvg+k+ ++f k ++ + Wvmheyrl Pahal.F00588.2 113 PVVLPrpcggGSLLVGVKRAMTFAprrkkK-----ASapsaalAAGWVMHEYRL 161 ***99899877777**********655332.....33233445889******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-40 | 16 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.282 | 20 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-20 | 21 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KAFGVPLPAA VIPVVRDLYS 60 LDPWDIPAAD ASEGEKYFFA VRPASVGGGC RKSGARSPAT ASGRWKPAGK EKPVVLPRPC 120 GGGSLLVGVK RAMTFAPRRK KKASAPSAAL AAGWVMHEYR LAAPLHKNGC SLAQAEGEWV 180 VCRVFQTQRS SNRPRRRGTP AGHAAAAASP SSSTASCVTD GSDQEEVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-28 | 20 | 193 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820407.1 | 1e-164 | NAC domain-containing protein 18-like isoform X2 | ||||
TrEMBL | A0A2S3I4F7 | 1e-163 | A0A2S3I4F7_9POAL; Uncharacterized protein | ||||
STRING | Si014408m | 1e-124 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 8e-36 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00588.2 |