![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.F00582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 491aa MW: 51466.3 Da PI: 6.7654 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 20 | 61 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ ++e + l+C+ + lC C + H H Pahal.F00582.1 20 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 61 7899*******9******************999545555555 PP | |||||||
2 | CCT | 63.4 | 6.7e-22 | 438 | 481 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++ Pahal.F00582.1 438 RDSAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKST 481 899***************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.3E-11 | 19 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 19 | 66 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.98E-8 | 22 | 66 | No hit | No description |
PROSITE profile | PS51017 | 15.338 | 438 | 480 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.9E-16 | 438 | 480 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 491 aa Download sequence Send to blast |
MKSGAGGAGG GGGAGGGGRQ QWPCDYCGEA AAALHCRADA ARLCVACDRH VHAANALSRK 60 HVRAPLCAGC AARPAAARVA AAAGAGGEAA FLCADCREGR GDGVAVEGFS GCPSAAELAA 120 SWGLDLRGAG GGCGEGDAEA EAEDDAFFSV LDYSMLGADP DLRDLYVPCD PPEVAAAGAR 180 RLKGEALCDQ LAEMARREAD TSSHPHQPHS DLSPRTPRRN SAASSGRLPG KMAAPPTLPP 240 HPPPAAVQEV PLPYTSLLMM ASASSTELIG GSGRMADDDE QLLWDCAAPS VPPTQIWDFN 300 LGRSRDHDEK SAIEVGFGSN HGGFMIKSYS DMLKEISSGT TKDLEDIYDS RYCSTAEDIM 360 SSNICQLSSK NVSTGSNKRK VSSCASTIDG PTTSGNHVPT SGPALTREIS FGDQTVSPAA 420 ADRPAAMRID SETLAQNRDS AMQRYREKRK NRRYEKHIRY ESRKLRADTR KRVKGRFVKS 480 TEPLNAVNGG * |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728418 | 0.0 | KJ728418.1 Zea mays clone pUT6723 orphans transcription factor (Orphan268) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820358.1 | 0.0 | zinc finger protein CONSTANS-LIKE 14 | ||||
TrEMBL | A0A2S3I4C2 | 0.0 | A0A2S3I4C2_9POAL; Uncharacterized protein | ||||
STRING | Sb07g025940.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4504 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28050.1 | 3e-19 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.F00582.1 |