PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00582.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 491aa    MW: 51466.3 Da    PI: 6.7654
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00582.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-062061237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    +++ C+ ++e  + l+C+ +   lC  C  + H        H
  Pahal.F00582.1 20 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 61
                    7899*******9******************999545555555 PP
2CCT63.46.7e-22438481144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++
  Pahal.F00582.1 438 RDSAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKST 481
                     899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-111966IPR000315B-box-type zinc finger
PROSITE profilePS501199.841966IPR000315B-box-type zinc finger
CDDcd000211.98E-82266No hitNo description
PROSITE profilePS5101715.338438480IPR010402CCT domain
PfamPF062032.9E-16438480IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKSGAGGAGG GGGAGGGGRQ QWPCDYCGEA AAALHCRADA ARLCVACDRH VHAANALSRK  60
HVRAPLCAGC AARPAAARVA AAAGAGGEAA FLCADCREGR GDGVAVEGFS GCPSAAELAA  120
SWGLDLRGAG GGCGEGDAEA EAEDDAFFSV LDYSMLGADP DLRDLYVPCD PPEVAAAGAR  180
RLKGEALCDQ LAEMARREAD TSSHPHQPHS DLSPRTPRRN SAASSGRLPG KMAAPPTLPP  240
HPPPAAVQEV PLPYTSLLMM ASASSTELIG GSGRMADDDE QLLWDCAAPS VPPTQIWDFN  300
LGRSRDHDEK SAIEVGFGSN HGGFMIKSYS DMLKEISSGT TKDLEDIYDS RYCSTAEDIM  360
SSNICQLSSK NVSTGSNKRK VSSCASTIDG PTTSGNHVPT SGPALTREIS FGDQTVSPAA  420
ADRPAAMRID SETLAQNRDS AMQRYREKRK NRRYEKHIRY ESRKLRADTR KRVKGRFVKS  480
TEPLNAVNGG *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284180.0KJ728418.1 Zea mays clone pUT6723 orphans transcription factor (Orphan268) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820358.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A2S3I4C20.0A0A2S3I4C2_9POAL; Uncharacterized protein
STRINGSb07g025940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.13e-19B-box type zinc finger protein with CCT domain