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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 35175.2 Da PI: 11.7918 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 6e-21 | 143 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a++ a+++++g Pahal.F00567.1 143 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAALRFKG 193 68********.**********64....55************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.3E-14 | 143 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-19 | 143 | 203 | No hit | No description |
SMART | SM00380 | 3.1E-35 | 144 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 144 | 202 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 144 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.317 | 144 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 145 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 167 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGVVCCLPAL RETGSKQAWI VPEKTPPPPP LLRAEATVAG GLRAMETQLS RRQEEEEGSS 60 AAAARGGPGG CGRRRSAPSS SRRSRTSSAP GGGSSSSSSP PRRRTTSSPS SRRRPCSGTT 120 GSKSGSGARP SAVATPERLL PRPRYRGVRQ RPWGKWAAEI RDPVKAARVW LGTFDTAEDA 180 ARAYDDAALR FKGAKAKLNF PPAAFRQGQH AGVAVAVAAP GPGHHHHAAA HLLHHRKQLA 240 GAASTSSTSR RPGPGPLHHL QGATAPGAAA AGAAGGVRAH QVSSEFPDLS QYAHILQSGD 300 LDLLAVSGGL TPGQSASSAT TAASSSSAPP EEPPPPRREP TT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 145 | 201 | 6 | 63 | ATERF1 |
3gcc_A | 5e-23 | 145 | 201 | 6 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093996 | 2e-66 | FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822482.1 | 2e-64 | uncharacterized protein LOC112898369 | ||||
STRING | Si013986m | 3e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25645 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-22 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00567.1 |