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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.F00514.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bZIP |
| Protein Properties |
Length: 376aa MW: 39586.2 Da PI: 6.1316 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.F00514.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 26.7 | 1.2e-08 | 194 | 252 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
k+++r + NR +A rs +RK +i+eLe+kv+ ++ e +aL+ +l l+ a l++e+
Pahal.F00514.1 194 KKAKRIINNRQSAARSKERKMRYIAELERKVQFMQREATALATQLALLQRDTAGLTAEN 252
89**********************************************99999988887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MNVDKTPIPG GGGGDAGGGG GGGCAGNVPA MQSSCDAVAA SPAPHTECDI SRMPDSPMRK 60
PGHRRALSDI IGLPEDLDLG APGAGDGPAL SDENEEELFS MFLDVEKLNS RCGASESESS 120
CAMAGGGGEA TQTSAAPGAG LRPKHQQRHS MDASSSIDTE NLFGTSAMEG VSPAEAKKAM 180
SAAKLAELAL IDPKKAKRII NNRQSAARSK ERKMRYIAEL ERKVQFMQRE ATALATQLAL 240
LQRDTAGLTA ENSELKIRLQ NTEQQVHLQD ALNEALKSEL QRLKMATGQM GSGGGGAMSF 300
HTSPHPFGVS QQVFHPNQAM PPFVAMQQQQ HPNQPLHPLQ TQQLQQAALN LNMNGPAPAP 360
NQWHWGDAWS ESSSS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035985 | 0.0 | BT035985.1 Zea mays full-length cDNA clone ZM_BFb0090M08 mRNA, complete cds. |
| GenBank | JX469928 | 0.0 | JX469928.1 Zea mays subsp. mays clone UT3186 bZIP-type transcription factor mRNA, partial cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
[PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
Biochem. J., 2007. 405(2): p. 243-9
[PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
[PMID:19104064] - Ordiz MI,Yang J,Barbazuk WB,Beachy RN
Functional analysis of the activation domain of RF2a, a rice transcription factor.
Plant Biotechnol. J., 2010. 8(7): p. 835-44
[PMID:20408988]
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