 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pahal.F00494.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 277aa MW: 29355.9 Da PI: 5.4274 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F00494.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 32.3 | 1.8e-10 | 105 | 150 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er RRd++ +f Lr +P+ ++++Ka+ L A+ YI +L
Pahal.F00494.1 105 SHMEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKASLLADATAYIAEL 150
899***********************8.....7***************998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MDEHGRPTSS TSSPPSPPSF FSAAGNGGLL EFPYTEVPEQ WLMDDDDDDS NIQEQLLSME 60 PCGGDGGSLS AGSADRSSRN PPAAAATRRG RKAGPSAGGG GPAVSHMEAE RHRRDKLHRR 120 FCDLRAAVPN VTRMDKASLL ADATAYIAEL RARVERLEAE ARWAAARKAN PFLVADDVAA 180 AASATKFELE EEEEKLEVRM VVGQEAAALR LTTTAARHAP ARLMDALRAL DLPVQHACAC 240 RVGGVTVQDA VVDVPAELRE AGCLRAALLH RLQGSG*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |