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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F00450.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
SRS |
Protein Properties |
Length: 310aa MW: 31367.4 Da PI: 8.0815 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F00450.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 220.1 | 4.5e-68 | 107 | 250 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97
+gt+sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqq+la+ a++ skr+r+ ++ s++++t++ss+e++
Pahal.F00450.1 107 AGTISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQHLATG--------AAEPSKRPRDA-GAQPSSTTATTTSSGEQQ 192
6899*************************************************9987........56789999997.455555556666666655 PP
DUF702 98 ke..letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++ + +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++
Pahal.F00450.1 193 QQmaMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIAGHVFKGILHDVGPD 250
551155678***********************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MAGFPLGGGG GGGGGHHGRG GGGDHHHHHP HVSPSSGSDS ATAAAAAAAA YLYTTAAAAP 60 RGGGFQLWPH HPAQEHHFYA PNIIRFADDP AAGSSRGGRG SASGAGAGTI SCQDCGNQAK 120 KDCAHMRCRT CCKSRGFDCP THVKSTWVPA AKRRERQQHL ATGAAEPSKR PRDAGAQPSS 180 TTATTTSSGE QQQQMAMVGE RFPREVSSEA VFRCVRLGPV DEADAEVAYQ TTVSIAGHVF 240 KGILHDVGPD PSVAAGGGFR HAAEGSSPST AAAGEGSVAG PVSSSAVVMD PYPTPGPYGG 300 APFFHGHPR*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G66350.1 | 1e-51 | Lateral root primordium (LRP) protein-related |