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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F00446.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 262aa MW: 29067.6 Da PI: 6.5089 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F00446.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd++l+ + +G +W+++++ g+ R++k+c++rw +yl
Pahal.F00446.1 14 RGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
89******************************99************97 PP
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2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+t E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
Pahal.F00446.1 70 LSTAEEQLVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
5899***************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MGRQPCCDKQ GVKRGPWTAE EDKKLISFIL THGRCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL STAEEQLVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPATHQPLA NSKAATSQST DTAESTKSSD TRDEQGVKEG SRRDMALHTD SSEQSSWLES 180 GNNAGGQDQE QLVKWLSETD LPVDEPWLNF TSTNGDALGI VEEPLPWDGA TDWLLDYQDF 240 GMCSSDLINS TTLPSSDGSN F*
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Functional Description ? help
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Source |
Description |
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068410 | 1e-152 | BT068410.1 Zea mays full-length cDNA clone ZM_BFb0166A10 mRNA, complete cds. |
GenBank | KJ727645 | 1e-152 | KJ727645.1 Zea mays clone pUT5572 MYB transcription factor (MYB167) mRNA, partial cds. |