PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00173.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 366aa    MW: 40765.9 Da    PI: 9.4749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00173.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.26.8e-49351602128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++
  Pahal.F00173.1  35 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEG 128
                     79***************************.89***************888889****************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +glkktLvfy g+apkg +++W+m+eyrl
  Pahal.F00173.1 129 NRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 160
                     ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5633180IPR003441NAC domain
PROSITE profilePS5100555.24634180IPR003441NAC domain
PfamPF023656.3E-2436160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGGDHHHHHH HHDGSMARGA GGDDGQQQAQ HDMVMPGFRF HPTEEELIDF YLRRRVEGKR  60
FNIELINLVD LYRYDPWDLP ALASIGDKEW FFYVPRDRKY RNGDRPNRVT PSGYWKATGA  120
DRMVRVEGNR SIGLKKTLVF YVGKAPKGLR SSWIMNEYRL PHGEADRYQK EISLCRVYKR  180
PGIEDNFHLT TTTRSSGSKA AASMEKKHHR TSASPRLAPM FDGAHSSAHM SKPYSGTNTI  240
MASSAAARAA TMAPQISMAF LSTASLSSTT STEEDGTSLY HLKDANPPML PSSTHALLNA  300
NSTTMAAIPI DELSRAIGGS YNNQVNPNNQ PLPSSQGPLL PFPSMEKIWD WNPLLESPKV  360
CTSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-533618019165NO APICAL MERISTEM PROTEIN
1ut4_B3e-533618019165NO APICAL MERISTEM PROTEIN
1ut7_A3e-533618019165NO APICAL MERISTEM PROTEIN
1ut7_B3e-533618019165NO APICAL MERISTEM PROTEIN
4dul_A3e-533618019165NAC domain-containing protein 19
4dul_B3e-533618019165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822212.10.0NAC domain-containing protein 35-like
SwissprotQ9ZVP82e-94NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2S3HZP10.0A0A2S3HZP1_9POAL; Uncharacterized protein
STRINGPavir.J38855.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.26e-96NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]