PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 42362 Da PI: 6.9031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.6e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ Pahal.F00157.1 11 VPPGFRFHPTEEELLNYYLRKKVASQEIDL-DVIRDVDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 104 69****************************.9***************952444443456************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +g++ktLvfykgrap+g+k+dW+mheyrl Pahal.F00157.1 105 YN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 **.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-57 | 7 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.434 | 11 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASQEIDL DVIRDVDLNK LEPWDIQEKC 60 KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVKR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPAASGDAAA TVAAAAAAAA SSDAGQEDGW VVCRVFKKKH 180 HHKESGGGGG RHGSGGGGDG GKAAAAAHHG LQYSSSDDAL DQILQYMGRS CKQEHEQLLS 240 PQGGGGGPGA RAGPRYLRPI DTVLGGHGFM KLPPLESPSA ALTPPHLSAA AGDAAAPPVD 300 DLLHGAGASG ITDWAMMDRL VASHLNGQAA DAAAPASHHQ LCFDDGPGAD DADGLAFYAA 360 ATTRLLGGGG VGGGSSDDDL WSFTRSSAPA AAATSTERLS HVSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 8 | 179 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 8 | 179 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 8 | 179 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 8 | 179 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-47 | 8 | 179 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 8 | 179 | 14 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 196 | GGRHGSGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075082 | 0.0 | KT075082.1 Panicum virgatum secondary wall NAC master switch (SWN2B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820040.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-123 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2S3HZQ3 | 0.0 | A0A2S3HZQ3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J20698.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 2e-92 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00157.1 |