PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E04531.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 438aa MW: 48006 Da PI: 4.9161

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E04531.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61	3.8e-19	13	154	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya.........tgk....rknratk 79 p+G+rF Pt+ el+ + L ++++ k +++++++++i++++P++L +++++ e++ +yfFs r+ +++ + + r ra++ Pahal.E04531.1 13 PRGYRFVPTQLELI-YLLSDRIHRGKlpPAFDRIFHNLRILDYHPEELYEMYREdaEHRYIYFFSWREFQKKgaggaapgdK-DqkepRLVRAAR 105 89**********.88999999888644445569999******74433321444669999876665555555551.044447778899 PP NAM 80 sgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 g Wka+g +++ +++ g + tLvfy r k++W mhe+ + Pahal.E04531.1 106 GGGWKASGGGEDLRWPRRKGgffAGRRITLVFY-DRG--VDKSNWGMHEFVV 154 *******999988633334559*****.344..459*****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-24	7	165	IPR003441	NAC domain
PROSITE profile	PS51005	23.431	12	170	IPR003441	NAC domain
Pfam	PF02365	2.3E-11	13	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MAADGSLTRH GFPRGYRFVP TQLELIYLLS DRIHRGKLPP AFDRIFHNLR ILDYHPEELY 60 EMYREDAEHR YIYFFSWREF QKKGAGGAAP GDKDQKEPRL VRAARGGGWK ASGGGEDLRW 120 PRRKGGFFAG RRITLVFYDR GVDKSNWGMH EFVVPFKDLA LYRLYILRSG DMESENDGAG 180 SSSQMLANDY DDHFSPSTAV APCPPVQPWG IFDAGASTSQ MPPQQQHRPS VEHAHYYNYQ 240 FAFGTSSTGA ATLQQAHDMP MHGTGLPGDW CQLASSPAPV PVPPAAADQA AHRADTTAAH 300 GAEQQAGHFV ATRSPCSPPA EQHVTATTEP AHAQSSDCVK LAKEAAPPPL EDVVPAAKDE 360 GMADADDYDG PGMPDWNLDF AALDDYSFQF TMEEILGYPA LDEPPAMEGD SNSGGENYSN 420 QAGDTKQEPP SALSSYY*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MAADGSLTRH GFPRGYRFVP TQLELIYLLS DRIHRGKLPP AFDRIFHNLR ILDYHPEELY  60
EMYREDAEHR YIYFFSWREF QKKGAGGAAP GDKDQKEPRL VRAARGGGWK ASGGGEDLRW  120
PRRKGGFFAG RRITLVFYDR GVDKSNWGMH EFVVPFKDLA LYRLYILRSG DMESENDGAG  180
SSSQMLANDY DDHFSPSTAV APCPPVQPWG IFDAGASTSQ MPPQQQHRPS VEHAHYYNYQ  240
FAFGTSSTGA ATLQQAHDMP MHGTGLPGDW CQLASSPAPV PVPPAAADQA AHRADTTAAH  300
GAEQQAGHFV ATRSPCSPPA EQHVTATTEP AHAQSSDCVK LAKEAAPPPL EDVVPAAKDE  360
GMADADDYDG PGMPDWNLDF AALDDYSFQF TMEEILGYPA LDEPPAMEGD SNSGGENYSN  420
QAGDTKQEPP SALSSYY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967494.1	1e-140	NAC domain-containing protein 48
TrEMBL	A0A2S3HZ41	0.0	A0A2S3HZ41_9POAL; Uncharacterized protein
STRING	Pavir.J17376.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3563	23	67

Link Out ? help Back to Top
Phytozome	Pahal.E04531.1