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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 38692.6 Da PI: 4.2472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.7e-20 | 117 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAak ++ a+ +l+g Pahal.E04503.1 117 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 167 689*******.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.16E-28 | 117 | 177 | No hit | No description |
Pfam | PF00847 | 2.8E-12 | 117 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-34 | 118 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-29 | 118 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 118 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 118 | 175 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-10 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MWAMEEEMFV AVRRTEHVEV TSRAVEVPPA AKESGGGAGP RTVRVFCDDY DATDSSGDDD 60 DEEAAAAARR RVKRYVQEIR LERAVKEAPP AKAAASSGEA GAPRPEEEGR RAGAAEPRFR 120 GVRRRPWGKY AAEIRDPWRR VRVWLGTFDT AEEAAKVYDS AAIQLRGPDA TTNFEQVDDA 180 APAVPAEVAE RLPQPPQAAA SKNASSSATS YDSGEESHAA AASPTSVLRS FPPSAVAAGT 240 CSKKPAPAPV PAAPLPASRA PETDESSGVF GCPFMGDDCF AGEFPPLYTD FDLLADFPEP 300 SLDFLADIPE EPLSLASFSA TTTTSSSETS SEPPSPERWQ QVDDFFQDIT DLFQIDPLPV 360 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 106 | 174 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817676.1 | 1e-177 | ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A2T7DT35 | 0.0 | A0A2T7DT35_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00092.1.p | 1e-162 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-24 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04503.1 |