PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 25815.5 Da PI: 5.6408 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 48 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Pahal.E04357.1 48 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 96 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-12 | 46 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-20 | 47 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-34 | 47 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 47 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 48 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.18E-29 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSDLSSDTSS TSSYSSSPST SSSSRGGGKS SKRPRADDGG GGEGAPAYRG VRMRAWGKWV 60 SEIREPRKKS RIWLGTFPCP EMAARAHDVA ALSIKGARAV LNFPDLAPAL PRPASLAPRD 120 VQAAAARAAL MQHKHRQLPG GAAAGTDSSS SPVLAPAAGF AAAPAAADDA QRPAGSNDHR 180 HDEPEPEPSR EERQPGQVEV AELVFDELAP LWVEDVVEFG PSDHPWTPYD GLDAVGFQPL 240 LWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 37 | 104 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ353852 | 1e-112 | DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds. | |||
GenBank | GU785008 | 1e-112 | GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds. | |||
GenBank | HG670306 | 1e-112 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818661.1 | 1e-173 | ethylene-responsive transcription factor ERF035-like | ||||
TrEMBL | A0A2T8IPB8 | 1e-172 | A0A2T8IPB8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00249.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04357.1 |