PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.E04300.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 242aa MW: 24474 Da PI: 9.3182

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E04300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.3e-37	44	100	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s ntkfCyynny+lsqPryfC+aCrryWt+GGalrnvPvGgg+rk Pahal.E04300.1 44 PEGLPCPRCESVNTKFCYYNNYNLSQPRYFCRACRRYWTRGGALRNVPVGGGTRKAT 100 57899*************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.8E-33	47	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	47	101	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	49	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MVRCAADMEA GHQAAEGGAL AVVASVAPAA GGGRGGGAGG GREPEGLPCP RCESVNTKFC 60 YYNNYNLSQP RYFCRACRRY WTRGGALRNV PVGGGTRKAT PATRRKRPAS SPPEPAPPAA 120 GVALPPLTMS GPHGALLRQY GMPFPAPAMA SPLAAVDPDR RLLDLGGSFS SLIAAAPGPD 180 VVGGHFSAGF LVGGLAPAMV HSPAGAAPAA TLPPPPPPQQ QVSQALPEGL LWSMGWPDLS 240 I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	RGGGAGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061950	1e-88	BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds.
GenBank	KJ727013	1e-88	KJ727013.1 Zea mays clone pUT3994 C2C2-DOF transcription factor (DOF7) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818172.1	1e-169	dof zinc finger protein DOF1.7
Swissprot	O82155	2e-34	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2S3HYK5	1e-168	A0A2S3HYK5_9POAL; Uncharacterized protein
STRING	Pavir.Ea00244.1.p	5e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	3e-25	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.E04300.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]