PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04286.8
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 441aa    MW: 49719.6 Da    PI: 7.9259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04286.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.11.5e-35441861128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                     lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+        
  Pahal.E04286.8  44 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvh 134
                     799************.99******999677544333..3444433445**********.555666799******************756666644 PP

             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pahal.E04286.8 135 KGETRWHKTGKTRPVMV-NGRKKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186
                     33778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3939205IPR003441NAC domain
PROSITE profilePS5100534.14444205IPR003441NAC domain
PfamPF023652.9E-1645186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPD WVGLPAGVKF DPTDQELIEH  60
LEAKVKDEGS RSHPLIDEFI PTIDGEDGIC YTHPEKLPGV TRDGLSKHFF HRPSKAYTTG  120
TRKRRKIQTE CDVHKGETRW HKTGKTRPVM VNGRKKGCKK ILVLYTNFGK HRKPEKTNWV  180
MHQYHLGDLE EEKEGELVVC KIFYQTQPRQ CSWSSERGAA AAAMAATTVQ EQRRRDSGSG  240
SCSSRDHEVS ATSFPAGYTV TTAVEMQQHM KQHSADHFSF APFRKTFDQE VGIGGDQVPS  300
NQLGRSEQHH GVQEQQPHRP VLATTAVPAT AFLISRPSNP VSTIVPPAMQ HTSVVLDHDQ  360
FHVPAILLHH HDKFQNMQQQ HQHQQPQPQQ KLDRRSAGLE ELIMGCTSST STKGETSIPQ  420
SQETEWPYHY WPPDNQDHHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-124218613140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170050.0KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818124.10.0NAC domain-containing protein 75-like isoform X2
SwissprotQ9M0F81e-149NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2S3HYN20.0A0A2S3HYN2_9POAL; Uncharacterized protein
STRINGPavir.Eb00261.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-115NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]