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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04286.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 436aa MW: 49089.9 Da PI: 7.9259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.1 | 1.4e-35 | 44 | 186 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Pahal.E04286.7 44 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvh 134 799************.99******999677544333..3444433445**********.555666799******************756666644 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Pahal.E04286.7 135 KGETRWHKTGKTRPVMV-NGRKKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186 33778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-39 | 39 | 205 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.144 | 44 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-16 | 45 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPD WVGLPAGVKF DPTDQELIEH 60 LEAKVKDEGS RSHPLIDEFI PTIDGEDGIC YTHPEKLPGV TRDGLSKHFF HRPSKAYTTG 120 TRKRRKIQTE CDVHKGETRW HKTGKTRPVM VNGRKKGCKK ILVLYTNFGK HRKPEKTNWV 180 MHQYHLGDLE EEKEGELVVC KIFYQTQPRQ CSWSSERGAA AAAMAATTVQ EQRRRDSGSG 240 SCSSRDHEVS ATSFPAGYTV TTAVEMQQHM KQHSADHFSF APFRKTFDQE VGIGGDQVPS 300 NQLGRSEQHH GVQEQQPHRP VLATTAVPAT AFLISRPSNP VSTIVPPAMQ HTSVVLDHDQ 360 FHVPAILLHH HDKFQHQHQQ PQPQQKLDRR SAGLEELIMG CTSSTSTKGE TSIPQSQETE 420 WPYHYWPPDN QDHHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-12 | 42 | 186 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017005 | 0.0 | KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818126.1 | 0.0 | NAC domain-containing protein 75-like isoform X4 | ||||
Swissprot | Q9M0F8 | 1e-148 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A2S3HYL8 | 0.0 | A0A2S3HYL8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DS96 | 0.0 | A0A2T7DS96_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00261.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-115 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04286.7 |
Publications ? help Back to Top | |||
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