PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04157.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 358aa    MW: 37358.1 Da    PI: 9.557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04157.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-09175201127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+lC  f ++G C y d C+FaHg+
  Pahal.E04157.1 175 YKTRLCEKFEAGGKCAYEDGCTFAHGQ 201
                     9************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-15169207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9173205IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535174202IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6175201IPR000571Zinc finger, CCCH-type
SMARTSM003560.13242268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5242267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.352242269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5245267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPRAASDRAR AAQGPRPKCR SGRAVASSLE PAAGGLSPSD PIPAATGSAA PGPQFATACR  60
LGLGSARPGR HLVAPRLKST ACVRPAAARV TLPALGVGFG GVRGEASMKR DAAAAAGFGV  120
SRWEESPDGV IVLPAGSAAP QHARHQRERE QQQQNFQGAG VFGDQHAEPP EKVFYKTRLC  180
EKFEAGGKCA YEDGCTFAHG QAELRPPLHV PPGLILKRRT PPPPPTPPPP PPSGADAPYG  240
VYYGKVCFEF RDRGTCHFGD RCSYAHASAA EVAEMRYPGG PRSVEHALRN APPLARVAYA  300
PGPRGSSSST NSYAPAARAF PSAPAAAAGE DGCKFSRLEL LSRKKTSGIY GDWPEED*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819424.10.0zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A2S3HY860.0A0A2S3HY86_9POAL; Uncharacterized protein
STRINGPavir.Ea00381.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-08C3H family protein