PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04073.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 302aa    MW: 32753 Da    PI: 9.5453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04073.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +v+++G g+W+tI +          R+  ++k++w++
   Pahal.E04073.1  5 KQRWTSEEEAALRTGVAKHGVGNWRTILNDPElssilRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.008161IPR017930Myb domain
SuperFamilySSF466898.61E-16259IPR009057Homeodomain-like
SMARTSM007176.0E-8459IPR001005SANT/Myb domain
PfamPF002494.6E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-13556IPR009057Homeodomain-like
CDDcd116601.44E-19657No hitNo description
Gene3DG3DSA:1.10.10.106.7E-18119192IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-17119194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.5E-11120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.037122190IPR005818Linker histone H1/H5, domain H15
PfamPF005382.4E-10123183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRTGV AKHGVGNWRT ILNDPELSSI LRYRSNVDLK DKWRNMNVTV  60
TASSSRDKAR TAVKKTRAAP KNNDHSAAIS TVTSDADDEM VDAKPIASVS TEAWNTSTSK  120
KSHSRLDNII MEAIKNLNEP MGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KDLASSGKLI  180
KVNRKYRIAP SSPRLEGRSP KMLLLEDVQK EPLKVMNDAS KSLTRSQVDA ELARMATMTP  240
EAAAAAAARA VAEAEAIMAE AEAAAREAEV AEAEAQAAQA FADAALLTLK NRNAAKLMAQ  300
G*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.10.0single myb histone 5-like
RefseqXP_025817367.10.0single myb histone 5-like
RefseqXP_025817368.10.0single myb histone 5-like
SwissprotC0HIA31e-142SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2T8INV00.0A0A2T8INV0_9POAL; Uncharacterized protein
STRINGPavir.Eb00490.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-53telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]