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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.E03955.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
M-type_MADS |
Protein Properties |
Length: 169aa MW: 19093.3 Da PI: 10.309 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.E03955.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 73.5 | 1.8e-23 | 40 | 87 | 4 | 51 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
++ rqv f kRr+g++KKA+ELS LCdaev +++fs+ gklyeyss
Pahal.E03955.1 40 QDRLSRQVRFFKRRTGLFKKAFELSLLCDAEVVLLVFSPAGKLYEYSS 87
67889*****************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MDDASSTPTG DWLRQAGIPD GGRQGPSMAP RGRVQLRRFQ DRLSRQVRFF KRRTGLFKKA 60 FELSLLCDAE VVLLVFSPAG KLYEYSSSAS IEHTYDGYQQ FARARRNVNE ASQNRNNNQD 120 DASSDLKSRF REITTWSLQN NAKASDADEL GKLEDLLRNA LRDTKSKK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-15 | 31 | 88 | 2 | 59 | Myocyte-specific enhancer factor 2A |
5f28_A | 3e-15 | 31 | 88 | 3 | 60 | MEF2C |
5f28_B | 3e-15 | 31 | 88 | 3 | 60 | MEF2C |
5f28_C | 3e-15 | 31 | 88 | 3 | 60 | MEF2C |
5f28_D | 3e-15 | 31 | 88 | 3 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF184819 | 3e-60 | KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]
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