PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03844.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 811aa    MW: 86448.6 Da    PI: 5.3817
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03844.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.34.8e-22104159156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+++lgL+ rqVk+WFqNrR+++k
  Pahal.E03844.1 104 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSRRLGLDPRQVKFWFQNRRTQMK 159
                     678899***********************************************999 PP
2START189.32e-593205521206
                     HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S....EE CS
           START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla....ka 79 
                     ela +a++elvk+a+++ep+W  s       e++n +e+  +f +  +     + +ea+r+sg+v+ +    lve+l+d + +W+ ++     ka
  Pahal.E03844.1 320 ELAISAMDELVKLAQLDEPLWLPSLnsspnkEMLNFEEYAHTFLPCIGvkpmgYVSEASRESGLVIIDDSiALVETLMDER-RWSDMFScmiaKA 413
                     57889*****************999888899999999999999988889***************98766559*********.************* PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghs 162
                     ++le ++sg      gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d     ++     ++  +R+++lpSg+++++++ng++
  Pahal.E03844.1 414 TVLEEVTSGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDGLLRDQNsattsNAANIRCRRLPSGCVMQDTPNGYC 508
                     **********************************************************85322222234568999******************** PP

                     EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     kvtwveh++++++++h+l+r+l++sgla+ga++w+a lqrqce+
  Pahal.E03844.1 509 KVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLAMLQRQCEC 552
                     ******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-2285161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-2489161IPR009057Homeodomain-like
PROSITE profilePS5007118.285101161IPR001356Homeobox domain
SMARTSM003894.8E-21102165IPR001356Homeobox domain
CDDcd000866.89E-20103161No hitNo description
PfamPF000461.5E-19104159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084846.95311555IPR002913START domain
SuperFamilySSF559619.16E-31313552No hitNo description
CDDcd088751.88E-114315551No hitNo description
SMARTSM002342.2E-49320552IPR002913START domain
PfamPF018527.1E-52321552IPR002913START domain
SuperFamilySSF559611.01E-20581802No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MSFGSLFDGG AGGGGGGGMQ FPFSAGFSSS PGLSLGLDNN AGGGAGMGGG RALPGGPGAG  60
GGSGAARDAD AENDSRSGSD HLDAMSGGGE DEDDAEPGNP RKRKKRYHRH TPQQIQELEA  120
LFKECPHPDE KQRGELSRRL GLDPRQVKFW FQNRRTQMKT QLERHENALL KQENDKLRAE  180
NMTIREAMRS PMCGSCGSPA MLGEVSLEEQ HLCIENARLK DELNRVYALA TKFLGKPMSM  240
LAGPMMQPHL SSLPMPSSSL ELAVGGFRGL GSIPSAAMPG SMGEFAGGVS SPLGTVITPA  300
RATGSAPPAM VGIDRSMLLE LAISAMDELV KLAQLDEPLW LPSLNSSPNK EMLNFEEYAH  360
TFLPCIGVKP MGYVSEASRE SGLVIIDDSI ALVETLMDER RWSDMFSCMI AKATVLEEVT  420
SGIAGSRNGA LLLMKAELQV LSPLVPIREV TFLRFCKQLA EGAWAVVDVS IDGLLRDQNS  480
ATTSNAANIR CRRLPSGCVM QDTPNGYCKV TWVEHTEYDE ASVHQLYRPL LRSGLAFGAR  540
RWLAMLQRQC ECLAILMSPD TVSANDSSVI TQEGKRSMLK LARRMTENFC AGVSASSARE  600
WSKLDGATGS IGEDVRVMAR KSVDEPGEPP GVVLSAATSV WVPVAPGKLF NFLRDEQLRA  660
EWDILSNGGP MQEMANIAKG QEHGNSVSLL RASAMSANQS SMLILQETCT DASGSMVVYA  720
PVDIPAMQLV MNGGDSTYVA LLPSGFAILP DGPSAATGHK TGGSLLTVAF QILVNSQPTA  780
KLTVESVETV NNLISCTIKK IKTALQCDAT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105PRKRKKR
2100104RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632490.0BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds.
GenBankBT0644530.0BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816451.10.0homeobox-leucine zipper protein ROC5-like
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A2S3HX750.0A0A2S3HX75_9POAL; Uncharacterized protein
STRINGSi000344m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]