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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.E03554.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GeBP |
Protein Properties |
Length: 410aa MW: 43101.2 Da PI: 4.7533 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.E03554.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 98.6 | 5.7e-31 | 87 | 186 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92
lfqrlw++e e+++L+G++df+a++g+ +++ d+ fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g ++f+++h+ i++++
Pahal.E03554.1 87 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGAIYDVA 181
79************************99877778*************************************998899****************** PP
DUF573 93 kkiWg 97
+ iW+
Pahal.E03554.1 182 RHIWR 186
****8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MAEVDDHHPL AAAASSSAGD DDEGTDTDAS NSDLANQQDP PTLTDATSAP PPTPAAAAAS 60 APEPSGAVPP PPPQTQGAGA AEDSRRLFQR LWTDEEELLI LRGFLDFTAR RGTTFASHQY 120 DTGPFYEEIR RRLSFDFTKS QLIEKLRRLK KKYRVCAARV AAQGAAFAFR SAHEGAIYDV 180 ARHIWRPAFR RGEGASAGDA SDEDDINPAA ALPNAMEDGG GGSAFAPTPR GRGGRRVRRR 240 TAQELEAPAL PSTSALMLND VAQEPLVVSV ENSAPAFAPP HPVQLPIVSP VVATPSPMPA 300 NGGGATEEVV RTILSPLLKE FISSVAAAGQ AGLGLGLGMG FGGIGGFDIL ALGFGTAGPN 360 PGMTGDEKWK QQQILELEVY LKRIELVREQ VTAALQELRS SEGPFTFGC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT065406 | 0.0 | BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds. |
GenBank | JX428457 | 0.0 | JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G28040.1 | 4e-39 | DNA-binding storekeeper protein-related transcriptional regulator |