PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03464.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 532aa    MW: 58323.2 Da    PI: 5.6278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03464.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.26.7e-4991361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGf F P+d el+ +yLk+k+ g+k+e  + i+evdiyk+ePwdLp+  ++  e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd++++
  Pahal.E03464.1   9 LPPGFGFYPSDTELIGHYLKRKILGQKIEH-NLIPEVDIYKHEPWDLPAkcNFPIEDNKWHFFASRDRKYPTGSRSNRATLAGYWKSTGKDRAIK 102
                     79*************************999.89***************6245555999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ g+kktLvf++gr p+g++t+W+mhey +
  Pahal.E03464.1 103 L-NKRTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                     *.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-573159IPR003441NAC domain
PROSITE profilePS5100554.8499159IPR003441NAC domain
PfamPF023651.4E-2310135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEALRNMKLP PGFGFYPSDT ELIGHYLKRK ILGQKIEHNL IPEVDIYKHE PWDLPAKCNF  60
PIEDNKWHFF ASRDRKYPTG SRSNRATLAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDEKE CQVSPGMKDA FVLCRVTKRS DWALENDNEV GDRNPHHQQQ  180
IDAATSIVKP EDAATAVVNP EDAATSVVKP EDAATSVVKP EDATASLICA GESNDVAMAS  240
ITADKESPNC SNELEAWLEE LLDPSPSFNP LPDTGSAILP LTEQYAESSN TGSVVPKIGP  300
DHASPIKDGT DATDYLFTDD LPDDLYNMLY PGIDEFSNNM FLEPAGLSGA SATNQAYHLM  360
GESPFALPNN FEDGTLKDEL QLDQENNNPN LSNGNIDNGV IIRRRSASSS AANISLAPGR  420
VKLQLGLKKM VTSNSESINQ TMKFADNSGR RLDLMTSVEC KKKHANDATS VKQSDAAKPG  480
EGHNNQGYLR GIKNAFRCSS AGFNAYILFT IFLVGVAAAA ALHYHRSGAS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4521628172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818496.10.0NAC domain-containing protein 74-like
SwissprotQ7GCL71e-167NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A2S3HX640.0A0A2S3HX64_9POAL; Uncharacterized protein
STRINGPavir.Ea01166.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-64NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]