PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03436.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 517aa MW: 56678.6 Da PI: 6.1138

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03436.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	136	195	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k++ Pahal.E03436.2 136 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNA 195 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	133	193	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	138	194	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	140	194	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	142	178	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MKVDMPQEKD NEMKVDTPQE KADEMKIDTP QEKGNEMKVD MPQEKGTEMK FDASQKEQDG 60 EMKVDAQQEK KDEQMKVDAS PMTENIQPGT LPTSDHNKED LGQVNSTEDK VASDPKGESE 120 KTSNEESGQD KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM 180 RNVPVGAGRR KSKNASLHYR QLLMAPDCML GSRVDISKSV LPEALVSPPS APIQSTSRNE 240 TVLKFGPEVP LCESMASALN IDEQNVKNPG SAPRGENRED NSCASSVTSY NGLPENMVHV 300 DKNGAPVYCN GVAPLPQYYL GTPFMYPWSV GWNNLPVMVP GKNMPEPASA SESCSTSSAP 360 WMTSPMMPAS RLPRPAFPYP LVPPALWGCL SGWPATTWNI PWIRTNGCVS PSSSSNSSCS 420 GNGSPTLGKH SRDSNPLKEE KKEKSLWVPK TLRIDDPDEA AKSSIWATLG IKPGDPGTFK 480 PFQSKVESKG QKSDTAQVLQ ANPAALSRSQ SFQESS*

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MKVDMPQEKD NEMKVDTPQE KADEMKIDTP QEKGNEMKVD MPQEKGTEMK FDASQKEQDG  60
EMKVDAQQEK KDEQMKVDAS PMTENIQPGT LPTSDHNKED LGQVNSTEDK VASDPKGESE  120
KTSNEESGQD KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM  180
RNVPVGAGRR KSKNASLHYR QLLMAPDCML GSRVDISKSV LPEALVSPPS APIQSTSRNE  240
TVLKFGPEVP LCESMASALN IDEQNVKNPG SAPRGENRED NSCASSVTSY NGLPENMVHV  300
DKNGAPVYCN GVAPLPQYYL GTPFMYPWSV GWNNLPVMVP GKNMPEPASA SESCSTSSAP  360
WMTSPMMPAS RLPRPAFPYP LVPPALWGCL SGWPATTWNI PWIRTNGCVS PSSSSNSSCS  420
GNGSPTLGKH SRDSNPLKEE KKEKSLWVPK TLRIDDPDEA AKSSIWATLG IKPGDPGTFK  480
PFQSKVESKG QKSDTAQVLQ ANPAALSRSQ SFQESS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF299560	0.0	KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815271.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2S3HWJ8	0.0	A0A2S3HWJ8_9POAL; Uncharacterized protein
STRING	Pavir.Eb01078.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-71	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.E03436.2