PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03436.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 517aa    MW: 56678.6 Da    PI: 6.1138
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03436.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-39136195261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k++
  Pahal.E03436.2 136 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNA 195
                     7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31133193IPR003851Zinc finger, Dof-type
PfamPF027013.8E-32138194IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891140194IPR003851Zinc finger, Dof-type
PROSITE patternPS013610142178IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MKVDMPQEKD NEMKVDTPQE KADEMKIDTP QEKGNEMKVD MPQEKGTEMK FDASQKEQDG  60
EMKVDAQQEK KDEQMKVDAS PMTENIQPGT LPTSDHNKED LGQVNSTEDK VASDPKGESE  120
KTSNEESGQD KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM  180
RNVPVGAGRR KSKNASLHYR QLLMAPDCML GSRVDISKSV LPEALVSPPS APIQSTSRNE  240
TVLKFGPEVP LCESMASALN IDEQNVKNPG SAPRGENRED NSCASSVTSY NGLPENMVHV  300
DKNGAPVYCN GVAPLPQYYL GTPFMYPWSV GWNNLPVMVP GKNMPEPASA SESCSTSSAP  360
WMTSPMMPAS RLPRPAFPYP LVPPALWGCL SGWPATTWNI PWIRTNGCVS PSSSSNSSCS  420
GNGSPTLGKH SRDSNPLKEE KKEKSLWVPK TLRIDDPDEA AKSSIWATLG IKPGDPGTFK  480
PFQSKVESKG QKSDTAQVLQ ANPAALSRSQ SFQESS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995600.0KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815271.10.0cyclic dof factor 2-like
TrEMBLA0A2S3HWJ80.0A0A2S3HWJ8_9POAL; Uncharacterized protein
STRINGPavir.Eb01078.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.25e-71cycling DOF factor 2