PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03324.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 500aa MW: 53835.9 Da PI: 8.5159

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03324.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.5	1.5e-33	126	185	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+s+ntkfCy+nny+++qPr++C++C+ryWt GG+lrnvPvG rr+++ s Pahal.E03324.3 126 PDTILPCPRCNSMNTKFCYFNNYNVNQPRHYCRGCKRYWTDGGTLRNVPVGCKRRNRRPS 185 67899**********************************************999987755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	112	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.3E-29	128	183	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.018	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MTVSFVVSTK LADDVRSNDG IACLPNKSLN VGASSFGSKN NKDGLQAISS QHGKMGADSE 60 SGKAEGGLQA ISSQHEKMEA DSKSEEAKNG LEAINSEHEE MEADSKSEEV KTDSDGSGQE 120 KVFKKPDTIL PCPRCNSMNT KFCYFNNYNV NQPRHYCRGC KRYWTDGGTL RNVPVGCKRR 180 NRRPSNRHFA IQPYDYSIAA NGYVAATSSS QSHAIKPYVL PGPSKENEAI TTSGSEMVLC 240 KSISPAPNTK EQKNNTRLVS LGSGDDKEEK SGLSSAVVSG SSDNSVPEKV GNYISGYRNG 300 VKEPPPHTQS YAAAVTAYAQ LSTDGTHGLV NSEVSPLSLL LSTMSDLGIR APAVPFPQPQ 360 VAPYWNRIPG WPNGAWSVPR PGSSVTTMPY LPQNSVARSG SSSLTLTLTL GKHPREANSQ 420 EEEKAEKTFW VPKALRITDP EEAAKSSIWA SLGIKPDERL FCKCFQSKNP KNGKTPESAQ 480 ALQANPAVFS STQTFQGRT*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MTVSFVVSTK LADDVRSNDG IACLPNKSLN VGASSFGSKN NKDGLQAISS QHGKMGADSE  60
SGKAEGGLQA ISSQHEKMEA DSKSEEAKNG LEAINSEHEE MEADSKSEEV KTDSDGSGQE  120
KVFKKPDTIL PCPRCNSMNT KFCYFNNYNV NQPRHYCRGC KRYWTDGGTL RNVPVGCKRR  180
NRRPSNRHFA IQPYDYSIAA NGYVAATSSS QSHAIKPYVL PGPSKENEAI TTSGSEMVLC  240
KSISPAPNTK EQKNNTRLVS LGSGDDKEEK SGLSSAVVSG SSDNSVPEKV GNYISGYRNG  300
VKEPPPHTQS YAAAVTAYAQ LSTDGTHGLV NSEVSPLSLL LSTMSDLGIR APAVPFPQPQ  360
VAPYWNRIPG WPNGAWSVPR PGSSVTTMPY LPQNSVARSG SSSLTLTLTL GKHPREANSQ  420
EEEKAEKTFW VPKALRITDP EEAAKSSIWA SLGIKPDERL FCKCFQSKNP KNGKTPESAQ  480
ALQANPAVFS STQTFQGRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	182	RNVPVGCKRRNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818008.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2S3HWD8	0.0	A0A2S3HWD8_9POAL; Uncharacterized protein
STRING	Pavir.Eb01147.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-35	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.E03324.3