PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03304.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 332aa MW: 36822.4 Da PI: 7.83

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03304.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.9e-10	45	87	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Pahal.E03304.2 45 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87 56889*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-8	37	90	No hit	No description
SMART	SM00338	4.2E-8	43	106	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	45	89	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-7	46	87	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.94E-7	47	90	No hit	No description
PROSITE pattern	PS00036	0	50	65	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.6E-34	129	204	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MMADASPRTE TSTDDTDDNH GLEPGTGALV VASDSSDRSK DKHEDQKTLR RLAQNREAAR 60 KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGIFISSS VDQSHSMSGN GALAFDMEYA 120 RWLEEHNRQI SELRAGVTAH ASDSDLRSVV DKIMSHYDEI FRLKGNAAKA DVFHVLSGMW 180 KTPAERCFLW LGGFRPSEVL KLLSTQLEPL TEQQLSGIGN LQQSSHQAED ALSQGMEALQ 240 QSLAETLAGS LSSSGSTGNV ANYMGQMAMA MGKLGTLENF LRQADNLRLQ TLQQMQRILT 300 TRQAARALLV ISDYSSRLRA LSSLWLARPK E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036137	0.0	BT036137.1 Zea mays full-length cDNA clone ZM_BFb0097M11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816990.1	0.0	transcription factor TGA2.3
Swissprot	P23923	0.0	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A2S3HW59	0.0	A0A2S3HW59_9POAL; Uncharacterized protein
STRING	Pavir.Eb01160.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-151	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Pahal.E03304.2

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]