PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03219.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 858aa MW: 96219.9 Da PI: 7.2256 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 120.2 | 1e-37 | 127 | 204 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls a++yh+rhkvCe+h++++vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Pahal.E03219.4 127 CCQVDGCHADLSGARDYHKRHKVCEAHTRTSVVRIKNIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQQ 204 6**************************************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-31 | 120 | 189 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-35 | 125 | 205 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.804 | 125 | 202 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-29 | 128 | 201 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 4.0E-5 | 589 | 735 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.66E-7 | 591 | 734 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.87E-8 | 626 | 734 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRELS 60 RVQGEIDFGV VVDKRRRLSP EEDGSAGCSN NSAVANGDNN HVVSVQRRQS SEEERPRKGA 120 SSSTPPCCQV DGCHADLSGA RDYHKRHKVC EAHTRTSVVR IKNIEHRFCQ QCSRFHLLQE 180 FDEGKKSCRS RLAKHNGRRR KGQQQGVADG NPTNENQSLS STLFLLLKQL SGLESGSSSE 240 QINHPNYLVN LLKNLAAIAS TQAYQDILKN ANSNPTSNAE GPPVKKRVQD FDLNDACIEE 300 VESRTDKIVF KLFGKEPKDF PVDLREQILN WLSHCPTDME SYIRPGCVIL TVYLRLPNWM 360 WDELDDDPVP WIEKLISMSN DGFWRTGWVY ARIQECLTLS YNGSLMLASP WQPVIGDRLQ 420 RLCVTPIAVD CSSTAKFCVR GFNIVQPTTK LLCVFGGKYL IQEETQMLPE GTTMQQGPQC 480 LTFSCSFPST SGRGFIEVED YDQSSLSVPF VVSDKDVCSE IRMLEHELNL SSFDETSERI 540 GDLMASRSRA LHFLQEIGWL LQRSHMQATS EQRQYCTDGF SVARFRWLLS FAIDQEWCAV 600 VKKLLNTMFQ GDIDLDVPSP VEFALGENLL VSAVNKRSKP LVQFLLRYRT RNYAPDSGAI 660 DPVQFLFTPD MTGPSNITPL HIAATISDST SVLDALTDDP QQLGIKAWKN ARDDTGFTPE 720 DYAQKRGHIS YIQMVQDKID RRLPKAHVSV AIPSRASAPD TVRKHGSQLK STDQTTFNVE 780 KSPQSISQPL SCRQCVHQDH QLAYRPRTNR FFSTRPAMLS LVAIAAVCVC VGLIMKSPPH 840 VSSMKPFLWE KIRWGPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-25 | 120 | 201 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 77 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819593.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2S3HW29 | 0.0 | A0A2S3HW29_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea01625.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03219.4 |
Publications ? help Back to Top | |||
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