PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03219.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 858aa MW: 96219.9 Da PI: 7.2256

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03219.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	120.2	1e-37	127	204	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls a++yh+rhkvCe+h++++vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Pahal.E03219.3 127 CCQVDGCHADLSGARDYHKRHKVCEAHTRTSVVRIKNIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQQ 204 6**************************************************************************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-31	120	189	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.89E-35	125	205	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.804	125	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.8E-29	128	201	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	4.0E-5	589	735	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.66E-7	591	734	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.87E-8	626	734	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRELS 60 RVQGEIDFGV VVDKRRRLSP EEDGSAGCSN NSAVANGDNN HVVSVQRRQS SEEERPRKGA 120 SSSTPPCCQV DGCHADLSGA RDYHKRHKVC EAHTRTSVVR IKNIEHRFCQ QCSRFHLLQE 180 FDEGKKSCRS RLAKHNGRRR KGQQQGVADG NPTNENQSLS STLFLLLKQL SGLESGSSSE 240 QINHPNYLVN LLKNLAAIAS TQAYQDILKN ANSNPTSNAE GPPVKKRVQD FDLNDACIEE 300 VESRTDKIVF KLFGKEPKDF PVDLREQILN WLSHCPTDME SYIRPGCVIL TVYLRLPNWM 360 WDELDDDPVP WIEKLISMSN DGFWRTGWVY ARIQECLTLS YNGSLMLASP WQPVIGDRLQ 420 RLCVTPIAVD CSSTAKFCVR GFNIVQPTTK LLCVFGGKYL IQEETQMLPE GTTMQQGPQC 480 LTFSCSFPST SGRGFIEVED YDQSSLSVPF VVSDKDVCSE IRMLEHELNL SSFDETSERI 540 GDLMASRSRA LHFLQEIGWL LQRSHMQATS EQRQYCTDGF SVARFRWLLS FAIDQEWCAV 600 VKKLLNTMFQ GDIDLDVPSP VEFALGENLL VSAVNKRSKP LVQFLLRYRT RNYAPDSGAI 660 DPVQFLFTPD MTGPSNITPL HIAATISDST SVLDALTDDP QQLGIKAWKN ARDDTGFTPE 720 DYAQKRGHIS YIQMVQDKID RRLPKAHVSV AIPSRASAPD TVRKHGSQLK STDQTTFNVE 780 KSPQSISQPL SCRQCVHQDH QLAYRPRTNR FFSTRPAMLS LVAIAAVCVC VGLIMKSPPH 840 VSSMKPFLWE KIRWGPN*

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRELS  60
RVQGEIDFGV VVDKRRRLSP EEDGSAGCSN NSAVANGDNN HVVSVQRRQS SEEERPRKGA  120
SSSTPPCCQV DGCHADLSGA RDYHKRHKVC EAHTRTSVVR IKNIEHRFCQ QCSRFHLLQE  180
FDEGKKSCRS RLAKHNGRRR KGQQQGVADG NPTNENQSLS STLFLLLKQL SGLESGSSSE  240
QINHPNYLVN LLKNLAAIAS TQAYQDILKN ANSNPTSNAE GPPVKKRVQD FDLNDACIEE  300
VESRTDKIVF KLFGKEPKDF PVDLREQILN WLSHCPTDME SYIRPGCVIL TVYLRLPNWM  360
WDELDDDPVP WIEKLISMSN DGFWRTGWVY ARIQECLTLS YNGSLMLASP WQPVIGDRLQ  420
RLCVTPIAVD CSSTAKFCVR GFNIVQPTTK LLCVFGGKYL IQEETQMLPE GTTMQQGPQC  480
LTFSCSFPST SGRGFIEVED YDQSSLSVPF VVSDKDVCSE IRMLEHELNL SSFDETSERI  540
GDLMASRSRA LHFLQEIGWL LQRSHMQATS EQRQYCTDGF SVARFRWLLS FAIDQEWCAV  600
VKKLLNTMFQ GDIDLDVPSP VEFALGENLL VSAVNKRSKP LVQFLLRYRT RNYAPDSGAI  660
DPVQFLFTPD MTGPSNITPL HIAATISDST SVLDALTDDP QQLGIKAWKN ARDDTGFTPE  720
DYAQKRGHIS YIQMVQDKID RRLPKAHVSV AIPSRASAPD TVRKHGSQLK STDQTTFNVE  780
KSPQSISQPL SCRQCVHQDH QLAYRPRTNR FFSTRPAMLS LVAIAAVCVC VGLIMKSPPH  840
VSSMKPFLWE KIRWGPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-25	120	201	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819593.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2S3HW29	0.0	A0A2S3HW29_9POAL; Uncharacterized protein
STRING	Pavir.Ea01625.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Pahal.E03219.3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]