PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 884aa MW: 98840.8 Da PI: 7.1427 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 120.1 | 1e-37 | 127 | 204 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls a++yh+rhkvCe+h++++vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Pahal.E03219.1 127 CCQVDGCHADLSGARDYHKRHKVCEAHTRTSVVRIKNIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQQ 204 6**************************************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-31 | 120 | 189 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.804 | 125 | 202 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.15E-35 | 125 | 205 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-29 | 128 | 201 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 3.7E-5 | 615 | 761 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.82E-7 | 617 | 760 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.10E-8 | 652 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRELS 60 RVQGEIDFGV VVDKRRRLSP EEDGSAGCSN NSAVANGDNN HVVSVQRRQS SEEERPRKGA 120 SSSTPPCCQV DGCHADLSGA RDYHKRHKVC EAHTRTSVVR IKNIEHRFCQ QCSRFHLLQE 180 FDEGKKSCRS RLAKHNGRRR KGQQQGVADG NPTNENQSLS STLFLLLKQL SGLESGSSSE 240 QINHPNYLVN LLKNLAAIAS TQAYQDILKN ANSNPTSNAG NNAANGSTMH ELIIRSIPVG 300 SESLAEGPPV KKRVQDFDLN DACIEEVESR TDKIVFKLFG KEPKDFPVDL REQILNWLSH 360 CPTDMESYIR PGCVILTVYL RLPNWMWDEL DDDPVPWIEK LISMSNDGFW RTGWVYARIQ 420 ECLTLSYNGS LMLASPWQPV IGDRLQRLCV TPIAVDCSST AKFCVRGFNI VQPTTKLLCV 480 FGGKYLIQEE TQMLPEGTTM QQGPQCLTFS CSFPSTSGRG FIEVEDYDQS SLSVPFVVSD 540 KDVCSEIRML EHELNLSSFD ETSERIGDLM ASRSRALHFL QEIGWLLQRS HMQATSEQRQ 600 YCTDGFSVAR FRWLLSFAID QEWCAVVKKL LNTMFQGDID LDVPSPVEFA LGENLLVSAV 660 NKRSKPLVQF LLRYRTRNYA PDSGAIDPVQ FLFTPDMTGP SNITPLHIAA TISDSTSVLD 720 ALTDDPQQLG IKAWKNARDD TGFTPEDYAQ KRGHISYIQM VQDKIDRRLP KAHVSVAIPS 780 RASAPDTVRK HGSQLKSTDQ TTFNVEKSPQ SISQPLSCRQ CVHQDHQLAY RPRTNRFFST 840 RPAMLSLVAI AAVCVCVGLI MKSPPHVSSM KPFLWEKIRW GPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-25 | 120 | 201 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 77 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819590.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_025819591.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2S3HWL1 | 0.0 | A0A2S3HWL1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea01625.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 1e-141 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03219.1 |
Publications ? help Back to Top | |||
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