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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.E03179.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
MYB |
| Protein Properties |
Length: 307aa MW: 33153.8 Da PI: 6.0936 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E03179.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd ll+ +v+ +G g+W+ a g++Rt+k+c++rw++yl
Pahal.E03179.1 36 RGPWTAEEDALLAGYVAAHGEGRWNELALAAGLRRTGKSCRLRWLNYL 83
89********************************************97 PP
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| 2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg +T+ E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
Pahal.E03179.1 89 RGGFTPREQLLILDLHSRWGNR-WSKIAAQLP-GRTDNEVKNYWRT 132
788*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MEMDALWMSP CGGISLPSSA AGVGEDEAAA AAELRRGPWT AEEDALLAGY VAAHGEGRWN 60
ELALAAGLRR TGKSCRLRWL NYLRPGVRRG GFTPREQLLI LDLHSRWGNR WSKIAAQLPG 120
RTDNEVKNYW RTRVQKHAKQ LGCDVGSGRF HDAMRNLWMP RLLERIHADE SAAGASHYYS 180
AASPAHAPSS KPAYQNAAAP IISNCARATS PEAASCVTGS PSSWEASPAA QFQTSSPTMA 240
ACWSTGQCQN GYSSASSGDM FEESWSELLA RANHDDADSA GLPDFGLGET GDNWWSLDDI 300
LQQPLY*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
| Publications
? help Back to Top |
- Ahn IP,Kim S,Kang S,Suh SC,Lee YH
Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
Phytopathology, 2005. 95(11): p. 1248-55
[PMID:18943354] - Campos-Soriano L,García-Martínez J,San Segundo B
The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
Mol. Plant Pathol., 2012. 13(6): p. 579-92
[PMID:22212404] - Yokotani N, et al.
Role of the rice transcription factor JAmyb in abiotic stress response.
J. Plant Res., 2013. 126(1): p. 131-9
[PMID:22847900] - Wang D, et al.
Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
[PMID:26740780] - Fred AK,Kiswara G,Yi G,Kim KM
Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
[PMID:26869604]
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