PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 337aa MW: 36667.8 Da PI: 4.6654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03073.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl Pahal.E03073.1 14 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	54.4	3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l Pahal.E03073.1 67 RGNISEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.718	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.36E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.323	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-25	65	115	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	67	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SEEEEEMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRAADFR 120 DGVVVNVDLS KLPGGGKRRG GRASRGVMAA AKVRKENKGK EKEKGKGKSK VAEAEQQEQL 180 EEDDDMTVST PSSHSQPSAT AQSEEQAQAS ASGVTSDDGP EEDPLALSEE MMSALLGPES 240 PKLEGGPDGS RMDSDSGPSV VVDSDSGPGG PTGDVAQELG DKAIMDWDLM GLDISTADDM 300 WDQLVWDYAD MDVVVPGGGH HQQEEVMSDL FFLDSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-24	12	115	5	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679411	0.0	HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819210.1	0.0	myb-related protein P-like
Swissprot	P27898	1e-74	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A2S3HWG0	0.0	A0A2S3HWG0_9POAL; Uncharacterized protein
STRING	Si002107m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-71	myb domain protein 12

Link Out ? help Back to Top
Phytozome	Pahal.E03073.1

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]