PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02992.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 684aa    MW: 75687.7 Da    PI: 6.9025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02992.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.2e-061031151426
                     --TTTTT-SS-SS CS
         zf-CCCH  14 tCkyGdrCkFaHg 26 
                      CkyG +C+F+H+
  Pahal.E02992.1 103 SCKYGTSCRFSHD 115
                     7***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.24486117IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.235130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.702.5E-75327570IPR013785Aldolase-type TIM barrel
SuperFamilySSF513958.9E-67331644No hitNo description
CDDcd028013.68E-96331566No hitNo description
PfamPF012077.2E-55334591IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360415433IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MTATAPATDP SDSSPAVTTD SPPPPRPTAE ELVARAVAPV KPAFLRPPPI REVPKEEGKA  60
GGGGAVVTGE KKSKRQLKRE RQQEQKSTSH LCIEVGKSGN VDSCKYGTSC RFSHDINAYL  120
AQKPGDLEGT CPFTALGHLC PYGLTCRFLG THKDNLAPQN HSEGNHERNP LSKDIQKLLW  180
KNKYKFPKAS AQIKLLGLKD GNKNKAKAAN DDNPHEAHEL NGDEKTESLS SIPANVEPDP  240
TLCKETDNSE GEPLVVSSVQ CVEPRPLKKS KVEVDETLND GTGIHDNEAE SEDLNLINGI  300
KVSSNNQSSC RVDLITTPHL REKKIIDFRE KLYLAPLTTV GNLPFRRLCK TLGADITCGE  360
MAMCTNLLQG QASEWALLRR HPSEDLFGVQ ICGPYPDTVA RTVELVDNEC SVDFIDINMG  420
CPIDIVVNKG AGSSLLTKPM RIKSIVQAAS TVTEKPLTVK VRTAFFEGRN RADSIVSDIY  480
DWGASAITIH GRSRQQRYSK LADWDYIYQC AQKAPDNLHV IGNGDVFSFT DWNKHVSDCS  540
KISTCMIARG ALIKPWLFTE IKEQRHWDIT SGERLNILKD FVHFGLEHWG SDSKGVETTR  600
HFLLEWLSYT CRYIPVGLLD VIPQRLNWRP PSYYGRDDLE TLMASDSAAD WIRISEMLLG  660
KVPEGFTFAP KHKSNAYDRA ENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A8e-2932857527266tRNA-dihydrouridine synthase B
6ei9_B8e-2932857527266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0678840.0BT067884.1 Zea mays full-length cDNA clone ZM_BFc0185C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824565.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2S3I5780.0A0A2S3I578_9POAL; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGSi009538m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]