 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.E02820.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
FAR1 |
| Protein Properties |
Length: 251aa MW: 28917.9 Da PI: 7.1635 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E02820.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 67.9 | 2.6e-21 | 29 | 117 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
f+ +Y+ + GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +raetrt+C+ ++ + +++ +++++v++l leHnH l+
Pahal.E02820.1 29 FWISYGGQKGFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKCPRAETRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 117
999****************************************999.999***************9888777***************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MEENREGLIY SLLPQVGMEF NTIDEAWMFW ISYGGQKGFE VRKMYTNKRK SDGKVRSCRY 60
VCANEGHRKK DKRDHLTKCP RAETRTDCQV RMGLIMDREK ETYKVADLIL EHNHMLQLPQ 120
TSHLMVSQRK ISELQGFEIE TADDAGIGPK AAHELACVQV GGSSNLSYTL RDHKNYLRAK 180
RQREMAYGQA GSMLMYFQDK IAENPSFQYA LQMDIEEQIA NIFWVDAKML TDYAYFGDVV 240
SFDTTFGTNK *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB108421 | 0.0 | AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence. |
| GenBank | AC077693 | 0.0 | AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
