PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02611.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 327aa    MW: 33324.9 Da    PI: 9.6334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02611.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29140199159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kkv+r+a d +v+++tY g Hnh+
  Pahal.E02611.1 140 VNDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKVQRCAADMSVLVTTYDGAHNHP 199
                     58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-30127199IPR003657WRKY domain
SuperFamilySSF1182906.93E-26134200IPR003657WRKY domain
PROSITE profilePS5081126.704135201IPR003657WRKY domain
SMARTSM007747.7E-35140200IPR003657WRKY domain
PfamPF031063.0E-25141199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MELKTLVFKE LMMRGAEKMN LVDEPAGPFL TLSLGPTNAI GASCRATGGD IAAKLRAHAG  60
DDEVTPTAGL ALGLRCDSGE PPVRAVVSAG TKRQRAASDD HQHGTSGANK RKALMLPAPP  120
QQERPADRVS FRARSSAATV NDGCQWRKYG QKVAKGNPCP RAYYRCTGAP DCPVRKKVQR  180
CAADMSVLVT TYDGAHNHPL TPYAAAMASA ILASAAAASS SSSSSSAPAD ATGTATAARA  240
RDAPLLVGPV AVLPPRRYPS SGAVAFSGGA PAAASSQNVV PVASIMQKAV ADPKFRAAVM  300
AAVASYVGEQ CGGSAINDLL TSAPPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-211352001276Probable WRKY transcription factor 4
2ayd_A8e-21128202275WRKY transcription factor 1
2lex_A9e-211352001276Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818819.10.0probable WRKY transcription factor 47 isoform X2
TrEMBLA0A2T8ILB70.0A0A2T8ILB7_9POAL; Uncharacterized protein
STRINGPavir.Eb02399.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-40WRKY DNA-binding protein 9