 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.E02408.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WRKY |
| Protein Properties |
Length: 354aa MW: 37283.9 Da PI: 6.6052 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E02408.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 83.6 | 1.9e-26 | 182 | 240 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p v+++tY eH h+
Pahal.E02408.1 182 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 240
699***********************9988***************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MRAVLLLVMA EHFNDWDLQA VVRSCGSVAH PDQPAEPGRP RGAAAALRAE AAAEAEGAPA 60
EPAAPPARAA QGHERAPPPP AAKGAALLYD LEYLDLDRKP FLLPVTPPPL GARAAGDDAR 120
EREVMISFPT AAAASTSGAQ QRAVPLGRKA GARTPRPKRS KKSQLKKVVR EMPVADGGAS 180
SSDPWAWRKY GQKPIKGSPY PRGYYKCSSM KGCMARKLVE RSPAKPGVLI VTYMAEHCHP 240
VPTQLNALAG TTRHKSSSSS GAASSSPKSH DHEQQGPPSV GAAAEDAARC DVDSNGKSAL 300
EFGGEEMAAV DDENELWPAG MDLDELLAPV DDDFDFEHAI DDGDGVLGRR LSL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK111416 | 1e-116 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. |
| GenBank | AY870601 | 1e-116 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |
