PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02408.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 354aa    MW: 37283.9 Da    PI: 6.6052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02408.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26182240259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Pahal.E02408.1 182 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 240
                     699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26180242IPR003657WRKY domain
SuperFamilySSF1182903.66E-24181242IPR003657WRKY domain
SMARTSM007743.2E-31181241IPR003657WRKY domain
PROSITE profilePS5081129.126182242IPR003657WRKY domain
PfamPF031062.2E-22183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRAVLLLVMA EHFNDWDLQA VVRSCGSVAH PDQPAEPGRP RGAAAALRAE AAAEAEGAPA  60
EPAAPPARAA QGHERAPPPP AAKGAALLYD LEYLDLDRKP FLLPVTPPPL GARAAGDDAR  120
EREVMISFPT AAAASTSGAQ QRAVPLGRKA GARTPRPKRS KKSQLKKVVR EMPVADGGAS  180
SSDPWAWRKY GQKPIKGSPY PRGYYKCSSM KGCMARKLVE RSPAKPGVLI VTYMAEHCHP  240
VPTQLNALAG TTRHKSSSSS GAASSSPKSH DHEQQGPPSV GAAAEDAARC DVDSNGKSAL  300
EFGGEEMAAV DDENELWPAG MDLDELLAPV DDDFDFEHAI DDGDGVLGRR LSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-18162243280Disease resistance protein RRS1
5w3x_D4e-18162243280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-116AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-116AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815405.10.0probable WRKY transcription factor 27
TrEMBLA0A2S3HUA30.0A0A2S3HUA3_9POAL; Uncharacterized protein
STRINGSi001863m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-35WRKY family protein