PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02332.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 350aa    MW: 37306.2 Da    PI: 8.5521
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02332.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15274299126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ + +tG C+yGd+C+FaHg
  Pahal.E02332.1 274 FKTELCNKWEETGACPYGDQCQFAHG 299
                     79***********************9 PP
2zf-CCCH17.57.4e-06312337126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt  Cr  +++  C+yG rC+F H+
  Pahal.E02332.1 312 YKTQVCRMVLAGEVCPYGHRCHFRHS 337
                     99*********66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-19268306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10270305IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601273301IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11307337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8308338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535311339IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5311338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MQEALLSPAN AGSLRSALEL KPFAFGDQRL ASPRYLNLAC GGGGDDAVDA LFRCSSPFSP  60
SFGFSSPSPL AASSVSLSPS SSASLVDDCD DAAAAAADAA TGHRLQLARL ALQYHEVADR  120
YELCLARLAE AADEAAALRR ENAELRVANG DLTRRLALLS GIGKQAAASA IADEVRRLRF  180
VDQKAAKERA PEKLAVLPKS ISVRSNDYLK MNQPNQAPAA PAASNRKPRA SNATKTSSRA  240
HMGGGGGGKK GEEIVKEQHA AGGTELEVYN QGMFKTELCN KWEETGACPY GDQCQFAHGV  300
AELRPVIRHP RYKTQVCRMV LAGEVCPYGH RCHFRHSLTP AERLLLPRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22274337467Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421470.0BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816734.10.0zinc finger CCCH domain-containing protein 9-like isoform X2
SwissprotA2ZVY51e-120C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A2T8IL210.0A0A2T8IL21_9POAL; Uncharacterized protein
STRINGPavir.Ea02238.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-52C3H family protein