PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02275.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 416aa    MW: 42252.4 Da    PI: 9.2075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02275.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001792112323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     Cp Cgk F+++     H+++H
  Pahal.E02275.1  92 CPLCGKEFRNHKAVCGHMKVH 112
                     *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.004190112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.88990117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-791112No hitNo description
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-7266293No hitNo description
SMARTSM003550.28271293IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577271298IPR007087Zinc finger, C2H2
PfamPF139120.0014271290IPR007087Zinc finger, C2H2
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-5317348No hitNo description
PfamPF139123.2E-6318343IPR007087Zinc finger, C2H2
SMARTSM003550.15319341IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097319346IPR007087Zinc finger, C2H2
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAGSSEDPCR TRRRRLADLY GGGGGGGQEE GGIVPGYHSD ADTAEYYNSN RDCSSDSDET  60
ISDSAPAHYG SGSTSPAAAS AGTCSAAAAL ACPLCGKEFR NHKAVCGHMK VHREQGIGKA  120
ARGIKRNVPV VGAWGGTAKR GCCSGSRASA SSPIPEPVDQ STAVVVAEAK IVLDPMPLAF  180
ATPNLPPVPA ATAAPDPSPV TASDSVESSS AQPTRGDATE AVAARAASPP KEAVVDLHAV  240
PPPPAAGEQA PPVRQQRVAP PPRGRQDPNG YTCSKCNKWF RTHQGLGGHT VDHKNREITA  300
ALQGSGAPHS RNAKAGRTHA CKVCGAEFPG GIQLGGHMRK HWKGKPFNKK PRRLVQPLPP  360
PGILTLAHVG SPAPGPAMAG RVLLFGIDIG AGLKTPAAQG GSSAPEASAS IGGDK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3HTA90.0A0A2S3HTA9_9POAL; Uncharacterized protein
STRINGPavir.Eb01749.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-13C2H2 family protein