PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02203.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 548aa    MW: 56045 Da    PI: 7.7398
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02203.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.4e-1669129257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  Pahal.E02203.1  69 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMRLqeygQVGDANVFYWFQNRKSRSKN 129
                     89*****************99*************************************995 PP
2Wus_type_Homeobox109.71.7e-3568130264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k
     Pahal.E02203.1  68 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKSRSKNK 130
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.28E-1163133IPR009057Homeodomain-like
PROSITE profilePS500719.97765130IPR001356Homeobox domain
SMARTSM003895.9E-667134IPR001356Homeobox domain
CDDcd000864.49E-668130No hitNo description
Gene3DG3DSA:1.10.10.607.1E-668132IPR009057Homeodomain-like
PfamPF000465.1E-1469128IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MASSFNNRHW PSMFRSKHAA EPWQAQPDIS GSPPSFLSGG GNTTSAAGSG LKHPSSGYAG  60
GEERTPDPKP RWNPRPEQIR ILEAIFNSGM VNPPRDEIPR IRMRLQEYGQ VGDANVFYWF  120
QNRKSRSKNK LRTAGTARPC ATRAPARGTA VAAPVTAPPA VQASQQLLTQ QVQLLASPVQ  180
APTSSSSSSS DRSSGSSRPA AKRAAQEMSP MAEMHCHLAP MAAMDLLGPL AATCPQMYYQ  240
GQPVAPASAP AHKVQDLVSS DEPIFQPWLQ GGYCLSAAEV AAILGGQNMH VPVQEQPAAS  300
LPAGAFLGLC NKVTGSAITS QRTCAWGSGL GQYCPGGGGA DPHQVGLGKN TTAAPNTVGR  360
EVAHEDATKL GLLQYCFGDS TAVDPASVTA TSPLAATPDA AVTVASVAAA TTAGLTGLPA  420
NIGAPNGVVA SYDLLQLQGL AADGALGVGA VTTSGAAAPA AAAPAGAHAQ QQEGGVAALC  480
VTDTATGKSV AHAVAAARLD VRAQFGDAAV LFRCAGERGL DIEQVPVDAS GRTVQPLQHG  540
AFYYVLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557941e-141BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819605.10.0WUSCHEL-related homeobox 7-like
SwissprotQ0JKK61e-106WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A2S3HTC80.0A0A2S3HTC8_9POAL; Uncharacterized protein
STRINGPavir.Eb02702.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-44homeobox-3