PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02180.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 323aa    MW: 35245.6 Da    PI: 9.0902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.9e-33662061128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                     lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp  + ++    +fF++ +k+y+tg+rk+r+++      + 
  Pahal.E02180.1  66 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GIGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqggET 158
                     799************.99****998885665443333333665557**********.555555677******************74445655577 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pahal.E02180.1 159 RWHKTGKTRPVFT-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                     8************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3758225IPR003441NAC domain
PROSITE profilePS5100533.1966225IPR003441NAC domain
PfamPF023654.2E-1567206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QASSHVNLIR TCPSCGHRAQ YEQLQAAATI  60
QDLPGLPAGV KFDPTDQELL EHLEGKARPD ARKLHPLIDE FIPTIEGENG ICYTHPERLP  120
GIGKDGLIRH FFHRPSKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRPVF TNGKLKGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EEKDGELVVS KVFYQTQPRQ CGSGSAATAK  240
DVVPLAASAA TPTDHHHHHH HDAGGNGGSN SMLKEAASIV DFYSPAALIG YNQAAPNSRA  300
AAPAHLMPNF EVHTAGTAGF GP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549450.0BT054945.1 Zea mays full-length cDNA clone ZM_BFc0091A12 mRNA, complete cds.
GenBankBT0629760.0BT062976.1 Zea mays full-length cDNA clone ZM_BFc0013H24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814631.10.0NAC domain-containing protein 73-like isoform X1
SwissprotO494591e-125NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2S3HT270.0A0A2S3HT27_9POAL; Uncharacterized protein
STRINGPavir.Eb02718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-125NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]