 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.E02156.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
Trihelix |
| Protein Properties |
Length: 323aa MW: 35078.5 Da PI: 10.301 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E02156.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 40.4 | 7.5e-13 | 18 | 103 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
+W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ + s ++++ ql
Pahal.E02156.1 18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWAFYGQL 103
7*******************************************999999********************9998775......346666666 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG 60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWAFY GQLDLLVGPT LAGGGNGAKK 120
PSPPRAAMPI FRRRKSPSRS PSPQSPPPLP MALPLPNYRR GSDLPSANLI HKAAAAAAAA 180
ATESDSEDGY NNNNDYDDDD GSQQSPSRSV SSRSGGAAAA APAVGSKRKM SSGSGGFGEL 240
ARAIETFAEM YERMEAAKQR HAEEMERQRI KFLKDLELKR MQTFVDMQLQ LARAKHARKG 300
DASSEMLMSL AALPFLSSPA YL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727855 | 0.0 | KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 1e-29 | sequence-specific DNA binding transcription factors |
